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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
ChIP-seq
Assay category
371
DNA binding
Target of assay
766
histone modification
765
histone
460
transcription factor
393
narrow histone mark
371
broad histone mark
308
control
100
RNA binding protein
89
recombinant protein
31
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
93
August, 2017
56
May, 2019
43
October, 2019
42
November, 2017
37
April, 2019
20
May, 2024
19
October, 2018
15
December, 2017
10
May, 2021
10
October, 2017
8
August, 2021
8
February, 2018
6
November, 2019
4
January, 2019
Available data
309
bigWig
308
bed narrowPeak
278
bam
221
bigBed narrowPeak
96
tagAlign
85
fastq
28
bed broadPeak
11
bed bed3+
bigBed broadPeak
Organism
367
Homo sapiens
Biosample type
303
tissue
primary cell
56
in vitro differentiated cells
11
cell line
1
stem cell
Organ
70
brain
57
heart
51
pancreas
40
connective tissue
36
blood vessel
36
vasculature
34
limb
33
liver
20
adipose tissue
16
musculature of body
16
nerve
14
artery
13
epithelium
10
kidney
4
embryo
4
spleen
Project
371
AMP
Genome assembly (visualization)
289
GRCh38
245
hg19
Lab
340
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
biosample_type!
primary cell
BIOSAMPLE
ASSAY
371 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
+ See 26 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
cell line
EndoC_BH1
6
Panc1
4
HepG2
1
stem cell
hESC
1
See all biosamples
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