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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
687
ChIP-seq
490
total RNA-seq
223
ATAC-seq
168
DNase-seq
168
single cell RNA-seq
28
snATAC-seq
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
RNA microarray
2
FAIRE-seq
Assay category
687
DNA binding
674
Transcription
421
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
554
histone
554
histone modification
296
narrow histone mark
258
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
February, 2021
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
118
July, 2018
115
May, 2019
109
August, 2017
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1455
bam
1328
bigWig
976
bed narrowPeak
624
tsv
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1853
Homo sapiens
Biosample type
1855
tissue
676
primary cell
227
in vitro differentiated cells
139
cell line
6
stem cell
Organ
313
heart
292
pancreas
291
kidney
277
liver
253
brain
133
blood vessel
133
vasculature
116
limb
80
musculature of body
73
artery
60
connective tissue
59
adipose tissue
56
eye
43
nerve
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1758
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1127
GRCh38
1009
hg19
Lab
1529
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
7
inconsistent ontology term
4
audit script error
files.file_type!
fastq
month_released!
February, 2021
BIOSAMPLE
ASSAY
1855 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
RNA microarray
FAIRE-seq
tissue
islet of Langerhans
43
195
48
7
4
3
1
4
liver
78
167
20
1
2
1
1
kidney
27
49
75
13
59
6
1
1
1
heart left ventricle
35
3
2
3
18
1
4
1
1
left cardiac atrium
40
1
18
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