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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
129
ATAC-seq
127
total RNA-seq
54
single cell RNA-seq
30
DNase-seq
29
snATAC-seq
17
pCHi-C
9
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
189
DNA accessibility
185
DNA binding
183
Transcription
10
DNA methylation
7
3D chromatin structure
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
55
June, 2019
54
May, 2022
34
October, 2019
31
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
1
August, 2017
1
March, 2020
1
March, 2023
Available data
421
bigWig
415
bam
227
bed narrowPeak
162
tsv
fastq
100
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
591
Homo sapiens
Biosample type
2108
tissue
591
primary cell
250
in vitro differentiated cells
143
cell line
6
stem cell
Organ
168
epithelium
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
314
AMP
204
T1D
72
HPAP
1
ITG
Genome assembly (visualization)
394
hg19
302
GRCh38
Lab
279
AMP-T2D consortium
239
Kyle Gaulton, UCSD
72
Klaus Kaestner, Upenn
1
ITG
Audit category:
47
inconsistent ontology term
1
audit script error
files.file_type!
fastq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
591 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
CD4-positive, alpha-beta memory T cell
22
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