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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
117
ATAC-seq
84
RNA microarray
58
ChIP-seq
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
304
Transcription
144
DNA accessibility
58
DNA binding
6
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
5
transcription factor
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
404
bam
361
bigWig
299
tsv
89
txt
58
tagAlign
49
bed narrowPeak
45
fastq
6
csv
1
bed bed3
1
bed bed3+
Organism
601
Homo sapiens
Biosample type
294
tissue
192
primary cell
97
cell line
18
in vitro differentiated cells
Organ
connective tissue
386
adipose tissue
197
liver
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
Project
511
AMP
45
HPAP
45
T1D
Genome assembly (visualization)
379
hg19
325
GRCh38
Lab
511
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
136
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
601 results
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total RNA-seq
ATAC-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
liver
143
50
1
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
+ See 9 more…
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
6
+ See 26 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
2
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
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