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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
99
DNA accessibility
64
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
38
bed narrowPeak
24
bam
24
fastq
20
bigWig
7
txt
1
bed bed3+
1
hic
Organism
201
Homo sapiens
Biosample type
135
primary cell
66
tissue
2
cell line
2
stem cell
Organ
104
pancreas
80
epithelium
40
liver
2
musculature of body
Project
134
HPAP
66
AMP
4
community
1
ITG
Genome assembly (visualization)
39
hg19
1
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
1
audit script error
month_released!
June, 2018
BIOSAMPLE
ASSAY
205 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
chondrocytes
1
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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