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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
173
ATAC-seq
4
FAIRE-seq
Assay category
1394
Transcription
1382
DNA binding
354
DNA accessibility
18
DNA methylation
Date released
157
June, 2019
45
May, 2020
26
November, 2019
18
February, 2021
18
May, 2022
15
October, 2019
14
September, 2018
13
May, 2021
10
August, 2017
10
August, 2021
8
November, 2018
6
July, 2019
6
October, 2017
5
September, 2017
2
November, 2020
1
March, 2019
Available data
459
bed narrowPeak
354
bam
315
bigWig
208
bigBed narrowPeak
177
bed bed3+
176
bed broadPeak
174
bigBed broadPeak
99
fastq
64
xls
60
zippedFastqFolder
14
tsv
11
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
354
Homo sapiens
Biosample type
215
tissue
109
primary cell
18
in vitro differentiated cells
12
cell line
Organ
80
kidney
75
pancreas
44
limb
42
epithelium
42
heart
brain
33
musculature of body
23
vasculature
21
blood vessel
18
ureter
14
artery
14
connective tissue
8
bone element
8
liver
8
skeleton
5
adipose tissue
4
eye
3
nerve
3
vein
2
spleen
Project
354
AMP
Genome assembly (visualization)
340
hg19
284
GRCh38
Lab
335
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
19
inconsistent ontology term
1
inconsistent replicate
organ_slims!
brain
BIOSAMPLE
ASSAY
354 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
1
38
1
heart
18
muscle of arm
17
kidney
13
1
muscle of leg
13
+ See 38 more…
primary cell
monocyte
15
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 44 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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