Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
65
DNase-seq
total RNA-seq
9
Hi-C
7
RRBS
6
small RNA-seq
5
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
257
DNA binding
72
DNA accessibility
10
Transcription
9
3D chromatin structure
8
DNA methylation
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
37
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
73
June, 2019
35
May, 2019
26
August, 2017
22
July, 2019
16
October, 2017
5
March, 2020
2
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
291
bam
281
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
23
fastq
12
tsv
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
359
Homo sapiens
Biosample type
325
tissue
34
primary cell
Organ
602
liver
543
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
359
AMP
Genome assembly (visualization)
261
GRCh38
228
hg19
Lab
359
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
359 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
WGBS
snATAC-seq
tissue
brain
20
14
1
1
skeletal muscle tissue
22
4
1
1
1
1
layer of hippocampus
23
muscle of leg
7
13
1
muscle of arm
17
+ See 81 more…
primary cell
skeletal muscle satellite cell
8
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
skeletal muscle cell
2
1
1
+ See 4 more…
See all biosamples
Download