- Title
- RNA-seq Pipeline 2 (Paired-ended, ENCODE)
- Assays
- RNA-seq
- Description
- Adopted ENCODE pipeline for paired-ended and stranded long RNA-seq data. RNA libraries generated from mRNAs (poly-A(+)), rRNA-depleted total RNA, or poly-A(-) populations that are size-selected to be longer than approximately 200 bp may be run through this pipeline. More information regarding references used for this pipeline and exogenous RNA spike-in controls are described in the pipelines overview document.
- Lab
- AMP-T2D consortium
- Award PI
- T2D AMP Consortium
- Pipeline Type
- text_file
- Pipeline Chain
- /pipelines/DPL269LNG/
- Pipeline Output
- alignments, transcriptome alignments, signal, gene quantifications, transcript quantifications
- Submitter comment
- Adopted ENCODE paired-ended RNA-seq pipeline (new version)