- Title
- RNA-seq Pipeline 2 (Single-ended, ENCODE)
- Assays
- RNA-seq
- Description
- Adopted pipeline for single-ended unstranded data long RNA-seq data as developed by the ENCODE RNA Working Group. RNA libraries generated from mRNAs (poly-A(+)), rRNA-depleted total RNA, or poly-A(-) populations that are size-selected to be longer than approximately 200 bp may be run through this pipeline. More information regarding uniform pipeline restrictions, references used for this pipeline, and exogenous RNA spike-in controls are described in the pipelines overview document.
- Lab
- AMP-T2D consortium
- Award PI
- T2D AMP Consortium
- Pipeline Type
- text_file
- Pipeline Chain
- /pipelines/DPL009OFN/
- Pipeline Output
- alignments, transcriptome alignments, signal, gene quantifications, transcript quantifications
- Submitter comment
- Adopted ENCODE single-ended RNA-seq pipeline (new version)