1. Pipelines
  2. ATAC-seq

Peak Alignment Pipeline

  • Status: active
Title
Peak Alignment Pipeline
Assays
ATAC-seq
Description
Builds a single unified, non-overlapping peak set across multiple MACS2 narrowPeak files, maps every original peak back to the unified peak it was collapsed into, and scores each input file's quality so low-quality files can be automatically excluded from the final set.
Lab
Kyle Gaulton, UCSD
Award PI
T2D AMP Consortium
Pipeline Type
github
Workflow Language
Python

Annotations

DSR473922, DSR912230, DSR117816, DSR951523, DSR983445, DSR905258, DSR750744, DSR118459, DSR891336, DSR881741, DSR819890, DSR855289, DSR491657, DSR534959, DSR432795, DSR786349, DSR034978, DSR614768, DSR940670, DSR397378, DSR837632, DSR580449, DSR227316, DSR643676, DSR521675, DSR564190, DSR699927, DSR014014, DSR844831, DSR671839, DSR962458, DSR539115, DSR840443, DSR294891, DSR496867, DSR190823, DSR800380, DSR404176, DSR520041, DSR532199, DSR952013, DSR335261, DSR403816, DSR074981, DSR250768, DSR198010, DSR856881, DSR783086, DSR838704, DSR463906, DSR844000, DSR785509, DSR236980, DSR495500, DSR748465, DSR669467, DSR403382, DSR827822, DSR014958, DSR753348, DSR331422, DSR543882, DSR039929, DSR483161, DSR924556, DSR640588, DSR389543, DSR953215, DSR669907, DSR936148, DSR604183, DSR559932, DSR882386, DSR392840, DSR250205, DSR958133, DSR986670, DSR706668, DSR317599, DSR626499, DSR822979, DSR293290, DSR953700, DSR656170, DSR161758, DSR628216, DSR234619, DSR419268, DSR851297, DSR105237, DSR670595, DSR490713, DSR055758, DSR326915, DSR476206, DSR392235, DSR140997, DSR749121, DSR806822, DSR591741, DSR549958, DSR302505, DSR418951, DSR880425, DSR628765, DSR158288, DSR461364, DSR657668, DSR932399, DSR826540, DSR015208, DSR186020, DSR390538, DSR102943, DSR463965, DSR551404, DSR630649, DSR373777, DSR985574, DSR475675, DSR026564, DSR052942, DSR131023, DSR063912, DSR221282, DSR701993, DSR219581, DSR132131, DSR794897, DSR826558, DSR141699, DSR131117, DSR982445, DSR414289, DSR110150, DSR925769, DSR384083, DSR678411, DSR979826, DSR725669, DSR097443, DSR492489, DSR525911, DSR552727, DSR183322, DSR570653, DSR577681, DSR200453, DSR359826, DSR358932, DSR530056, DSR609660, DSR425835, DSR329985, DSR716738, DSR717024, DSR737364, DSR496495, DSR885753, DSR952612, DSR679884, DSR251278, DSR922462, DSR171065, DSR342316, DSR908082, DSR041683, DSR208841, DSR778038, DSR928912, DSR082824, DSR614856, DSR168597, DSR921231, DSR586012, DSR528125, DSR880561, DSR338601, DSR776977, DSR526848, DSR816403, DSR477145, DSR680185, DSR575000, DSR416867, DSR050861, DSR564644, DSR654188, DSR051291, DSR246992, DSR347342, DSR430925, DSR651963, DSR312588, DSR165767, DSR119216, DSR250611, DSR124109, DSR229675, DSR115131, DSR289697, DSR376617, DSR768066, DSR136512, DSR630141, DSR895237, DSR233411, DSR994781, DSR846629, DSR095349, DSR056163, DSR861414, DSR566656, DSR289157, DSR319322, DSR347255, DSR076674, DSR560559, DSR156645, DSR885039, DSR644292, DSR773796, DSR486167, DSR680993, DSR111267, DSR551657, DSR941822, DSR466148, DSR464819, DSR010360, DSR512642, DSR889512, DSR298865, DSR744181, DSR511620, DSR205437, DSR034110, DSR439394, DSR946656, DSR374154, DSR830714, DSR067426, DSR192227, DSR256714, DSR062580, DSR272667, DSR326588, DSR682092, DSR984979, DSR868464, DSR644662, DSR021528, DSR652723, DSR908597, DSR659664, DSR841812, DSR185363, DSR827548, DSR635838, DSR610369, DSR979752, DSR674662, DSR885017, DSR825244, DSR089342, DSR301102, DSR358294, DSR635803, DSR679348, DSR027611, DSR119953, DSR250349, DSR800420, DSR090989, DSR823164, DSR048569, DSR844158, DSR220979, DSR659860, DSR819047, DSR999015, DSR637996, DSR020505, DSR147208, DSR055701, DSR357731, DSR315323, DSR051296, DSR196349, DSR687646, DSR885975, DSR169278, DSR516514, DSR557935, DSR647441, DSR603184, DSR169216, DSR053775, DSR069365, DSR564324, DSR644580, DSR526118, DSR572729, DSR230761, DSR974060, DSR716928, DSR805216, DSR965952, DSR347054, DSR165516, DSR801108, DSR415640, DSR722673, DSR064370, DSR050343, DSR456011, DSR228899, DSR225238, DSR952234, DSR241272, DSR677962, DSR527903, DSR741029, DSR150193, DSR018888, DSR628375, DSR937301, DSR925781, DSR319787, DSR567985, DSR510243, DSR940153, DSR574258, DSR998415, DSR791474, DSR175133, DSR627693, DSR525375, DSR203173, DSR750183, DSR508777, DSR207464, DSR614914, DSR257721, DSR234845, DSR623715, DSR689842, DSR648811, DSR988490, DSR402540, DSR541561, DSR566770, DSR647514, DSR743302, DSR075282, DSR011551, DSR734967, DSR444453, DSR616939, DSR215812, DSR556687, DSR265345, DSR287795, DSR276343, DSR113443, DSR806095, DSR524081, DSR397634, DSR421114, DSR148675, DSR277386, DSR491849, DSR648693, DSR778879, DSR226037, DSR698266, DSR994473, DSR934616, DSR870204, DSR185195, DSR942137, DSR754681, DSR901171, DSR628135, DSR549268, DSR646323, DSR360524, DSR490312, DSR658286, DSR464432, DSR077835, DSR406030, DSR765928, DSR851027, DSR668076, DSR761054, DSR103522, DSR037166, DSR755749, DSR355285, DSR778056, DSR778025, DSR760696, DSR999908, DSR349443, DSR319740, DSR269498, DSR354071, DSR377498, DSR356578, DSR921276, DSR042057, DSR265473, DSR182195, DSR226807, DSR652624, DSR046950, DSR805206, DSR450871, DSR923256, DSR355185, DSR555681, DSR457425, DSR956031, DSR952526, DSR599837, DSR130538, DSR024732, DSR580001, DSR164575, DSR330111, DSR717690, DSR367493, DSR365217, DSR761099, DSR035541, DSR804661, DSR044444, DSR875681, DSR915901, DSR459499, DSR843693, DSR834720, DSR686671, DSR151925, DSR357852, DSR589756, DSR298061, DSR274480, DSR938042, DSR902913, DSR809356, DSR178558, DSR870315, DSR673561, DSR668315, DSR383062, DSR789388, DSR028004, DSR065409, DSR762303, DSR020889, DSR359073, DSR918682, DSR228894, DSR650649, DSR287923, DSR103469, DSR852930, DSR817900, DSR974538, DSR687559, DSR474809, DSR100994, DSR038581, DSR945827, DSR086847, DSR843418, DSR449307, DSR840317, DSR494763, DSR677914, DSR688305, DSR337882, DSR883424, DSR915285, DSR332509, DSR708715, DSR786085, DSR556690, DSR388130, DSR620587, DSR395577, DSR154747, DSR964891, DSR123903, DSR540644, DSR328597, DSR510711, DSR282742, DSR721614, DSR930285, DSR256218, DSR490943, DSR115758, DSR428676, DSR569752, DSR723636, DSR729480, DSR948104, DSR464387, DSR032897, DSR772535, DSR353227, DSR927221, DSR357672, DSR183977, DSR478742, DSR721923, DSR407176, DSR480165, DSR216071, DSR692706, DSR248697, DSR167717, DSR060818, DSR829051, DSR631964, DSR765627, DSR476140, DSR560626, DSR324740, DSR839119, DSR878957, DSR482358, DSR768440, DSR637227, DSR390639, DSR228935, DSR992990, DSR249175, DSR288019, DSR830340, DSR662063, DSR422679, DSR135691, DSR548058, DSR933011, DSR707769, DSR008434, DSR227961, DSR125264, DSR811785, DSR294173, DSR656869, DSR583260, DSR391775, DSR925595, DSR668969, DSR878329, DSR300955, DSR183232, DSR360893, DSR169475, DSR266335, DSR979887, DSR196599, DSR868763, DSR046730, DSR521274

Pipeline schematic