{
"aliases": [
"amp-t2d-consortium:GSE97655_scRNA_alphaCell_patient2_rep3_B1_T1"
],
"technical_replicate_number": 3,
"library": {
"accession": "TSTLB616915",
"biosample": {
"biosample_term_name": "pancreatic alpha cell",
"donor": {
"dbxrefs": [],
"ethnicity": "East-Asian (Chinese)",
"life_stage": "adult",
"status": "released",
"health_status": "Non-diabetic. Low Glucose 64.9; High Glucose 1187.3",
"award": "/awards/U01DK100554/",
"parents": [],
"organism": {
"scientific_name": "Homo sapiens",
"taxon_id": "9606",
"status": "current",
"schema_version": "4",
"name": "human",
"@id": "/organisms/human/",
"@type": [
"Organism",
"Item"
],
"uuid": "2e5a2453-8f03-45ee-82e4-9b7e6c963f43"
},
"age": "49",
"age_units": "year",
"schema_version": "11",
"aliases": [],
"siblings": [],
"sex": "female",
"accession": "TSTDO862863 (East-Asian patient 2)",
"submitted_by": "/users/2d763e07-6fff-40d7-bd17-00784e0bfdef/",
"documents": [],
"alternate_accessions": [],
"notes": "Genome Institute of Singapore, Rajkumar Dorajoo; 2017-04-11. East-Asian non-diabetic patient 2 pancreatic islet",
"date_created": "2018-02-13T19:29:44.044852+00:00",
"references": [],
"lab": "/labs/amp-t2d-consortium/",
"@id": "/human-donors/TSTDO862863%20(East-Asian%20patient%202)/",
"@type": [
"HumanDonor",
"Donor",
"Item"
],
"uuid": "f3dd8040-3a3e-4988-a9fa-a91b152e5552",
"characterizations": [],
"children": []
},
"submitted_by": "/users/1396e9a3-22b2-42e4-9b19-b874944f9981/",
"biosample_type": "primary cell",
"source": "/sources/unknown/",
"aliases": [
"amp-t2d-consortium:GSM2574547"
],
"notes": "GEO Sample GSM2574547",
"url": "https://www.ncbi.nlm.nih.gov/biosample/?term=GSM2574547",
"documents": [],
"internal_tags": [],
"submitter_comment": "GEO Sample GSM2574547",
"references": [],
"alternate_accessions": [],
"organism": "/organisms/human/",
"dbxrefs": [
"GEO:SAMN06710366"
],
"description": "GEO Sample GSM2574547 pancreatic Alpha cell",
"award": "/awards/U01DK100554/",
"genetic_modifications": [],
"date_created": "2018-02-14T22:06:55.236806+00:00",
"status": "released",
"accession": "TSTBS850686",
"schema_version": "20",
"biosample_term_id": "CL:0000171",
"lab": "/labs/amp-t2d-consortium/",
"treatments": [],
"biosample_synonyms": [
"pancreatic alpha cell",
"alpha cell of iselt of Langerhans",
"alpha cell"
],
"organ_slims": [
"pancreas",
"epithelium"
],
"system_slims": [
"endocrine system"
],
"developmental_slims": [
"endoderm"
],
"@id": "/biosamples/TSTBS850686/",
"@type": [
"Biosample",
"Item"
],
"uuid": "b602c625-a505-4fec-b769-c0b17c9fbbb9",
"sex": "female",
"age": "49",
"age_units": "year",
"health_status": "Non-diabetic. Low Glucose 64.9; High Glucose 1187.3",
"life_stage": "adult",
"applied_modifications": [],
"characterizations": [],
"parent_of": [],
"age_display": "49 year",
"summary": "Homo sapiens pancreatic alpha primary cell female adult (49 years)"
},
"size_range": ">200",
"nucleic_acid_starting_quantity": "1",
"alternate_accessions": [],
"schema_version": "8",
"spikeins_used": [],
"strand_specificity": false,
"dbxrefs": [],
"nucleic_acid_starting_quantity_units": "cells",
"documents": [],
"aliases": [
"amp-t2d-consortium:GSE97655_scRNA_alphaCell_patient2_rep3"
],
"treatments": [],
"date_created": "2018-02-14T23:34:33.065830+00:00",
"lab": "/labs/amp-t2d-consortium/",
"submitted_by": "/users/1396e9a3-22b2-42e4-9b19-b874944f9981/",
"status": "released",
"award": "/awards/U01DK100554/",
"nucleic_acid_term_name": "RNA",
"@id": "/libraries/TSTLB616915/",
"@type": [
"Library",
"Item"
],
"uuid": "b44b7d0a-636b-4975-8d60-ed6e61516114",
"nucleic_acid_term_id": "SO:0000356"
},
"experiment": {
"biosample_type": "primary cell",
"date_released": "2018-07-23",
"date_created": "2018-02-14T19:42:34.554103+00:00",
"status": "released",
"accession": "TSTSR887119",
"description": "GEO GSE97655 single cell RNA-seq for pancreatic Alpha cell",
"biosample_term_id": "CL:0000171",
"dbxrefs": [
"GEO:GSE97655"
],
"biosample_term_name": "pancreatic alpha cell",
"references": [],
"award": "/awards/U01DK100554/",
"internal_tags": [],
"alternate_accessions": [],
"internal_status": "unreviewed",
"possible_controls": [],
"assay_term_name": "single cell isolation followed by RNA-seq",
"aliases": [
"amp-t2d-consortium:GSE97655_scRNA_alphaCell"
],
"related_files": [],
"schema_version": "16",
"supersedes": [],
"documents": [],
"lab": "/labs/amp-t2d-consortium/",
"submitted_by": "/users/1396e9a3-22b2-42e4-9b19-b874944f9981/",
"assay_term_id": "NTR:0003082",
"biosample_synonyms": [
"pancreatic alpha cell",
"alpha cell of iselt of Langerhans",
"alpha cell"
],
"organ_slims": [
"pancreas",
"epithelium"
],
"system_slims": [
"endocrine system"
],
"developmental_slims": [
"endoderm"
],
"@id": "/experiments/TSTSR887119/",
"@type": [
"Experiment",
"Dataset",
"Item"
],
"uuid": "08b7ee65-0756-4f55-baf9-a7e94be6ee57",
"original_files": [
"/files/TSTFF954375/",
"/files/TSTFF873963/",
"/files/TSTFF000463/",
"/files/TSTFF153306/",
"/files/TSTFF504560/",
"/files/TSTFF523396/",
"/files/TSTFF400889/",
"/files/TSTFF296904/",
"/files/TSTFF631083/",
"/files/TSTFF669084/",
"/files/TSTFF265636/",
"/files/TSTFF040583/",
"/files/TSTFF622371/",
"/files/TSTFF674041/",
"/files/TSTFF279314/",
"/files/TSTFF359944/",
"/files/TSTFF016620/",
"/files/TSTFF536554/",
"/files/TSTFF075617/",
"/files/TSTFF621415/",
"/files/TSTFF774021/",
"/files/TSTFF156177/",
"/files/TSTFF356177/",
"/files/TSTFF302283/",
"/files/TSTFF695288/",
"/files/TSTFF655923/",
"/files/TSTFF766578/",
"/files/TSTFF117751/",
"/files/TSTFF676167/",
"/files/TSTFF876113/",
"/files/TSTFF779406/",
"/files/TSTFF482856/",
"/files/TSTFF677800/",
"/files/TSTFF722046/",
"/files/TSTFF819160/",
"/files/TSTFF026909/",
"/files/TSTFF559746/",
"/files/TSTFF881488/",
"/files/TSTFF907611/",
"/files/TSTFF193929/",
"/files/TSTFF154564/"
],
"contributing_files": [],
"files": [
"/files/TSTFF954375/",
"/files/TSTFF873963/",
"/files/TSTFF000463/",
"/files/TSTFF153306/",
"/files/TSTFF504560/",
"/files/TSTFF523396/",
"/files/TSTFF400889/",
"/files/TSTFF296904/",
"/files/TSTFF631083/",
"/files/TSTFF669084/",
"/files/TSTFF265636/",
"/files/TSTFF040583/",
"/files/TSTFF622371/",
"/files/TSTFF674041/",
"/files/TSTFF279314/",
"/files/TSTFF359944/",
"/files/TSTFF016620/",
"/files/TSTFF536554/",
"/files/TSTFF075617/",
"/files/TSTFF621415/",
"/files/TSTFF774021/",
"/files/TSTFF156177/",
"/files/TSTFF356177/",
"/files/TSTFF302283/",
"/files/TSTFF695288/",
"/files/TSTFF655923/",
"/files/TSTFF766578/",
"/files/TSTFF117751/",
"/files/TSTFF676167/",
"/files/TSTFF876113/",
"/files/TSTFF779406/",
"/files/TSTFF482856/",
"/files/TSTFF677800/",
"/files/TSTFF722046/",
"/files/TSTFF819160/",
"/files/TSTFF026909/",
"/files/TSTFF559746/",
"/files/TSTFF881488/",
"/files/TSTFF907611/",
"/files/TSTFF193929/",
"/files/TSTFF154564/"
],
"revoked_files": [],
"assembly": [
"hg19",
"GRCh38"
],
"hub": "/experiments/TSTSR887119/@@hub/hub.txt",
"month_released": "July, 2018",
"replicates": [
"/replicates/b758f4fd-51b8-4154-b9b2-c34eaf890ba6/",
"/replicates/a0554fe1-2c64-4c7d-a7b7-bfd3fb96646c/",
"/replicates/6dd15423-c3c6-4231-a393-16da78bd75ad/",
"/replicates/8b29ca2f-f131-4dc0-ad2d-2aa1f8fb4700/",
"/replicates/8cfbd8b0-9c09-459e-ba23-25186a855ff8/",
"/replicates/140ce679-46cf-4b4f-853c-dc07eca79a4f/",
"/replicates/a29b0c2f-2b7d-4452-afdf-1bbf4054a6f2/",
"/replicates/b2abf651-b89f-4b6d-970e-ecba623ca890/",
"/replicates/73864496-64fe-4979-b511-4d138718460e/",
"/replicates/2b9f9224-e949-4d0f-b34f-aeab5a6d3e09/",
"/replicates/15733c2d-f97d-48b4-9944-b52e0e48bbb9/",
"/replicates/145bd806-522e-4a33-91c4-9abe26013e3a/",
"/replicates/345bdf5c-f563-4665-b15a-1f127d343bdf/",
"/replicates/93f02faa-7f75-43a0-aca4-96f29877a41e/",
"/replicates/d2e58c3e-65f5-4a90-af29-940725eac832/",
"/replicates/817006ea-909a-4a6d-8d02-a1cc078f4bed/",
"/replicates/83d71a87-23d2-4629-ad34-2ff76d053867/",
"/replicates/342f18fd-b7a6-42dd-8d2a-28c5b2fdd691/",
"/replicates/644e0fcd-a582-43c6-bdd8-d4d3e4edf44f/",
"/replicates/734d9f15-e066-4132-a8d0-7e822923f1d2/",
"/replicates/5b3da0ff-6cdb-48c1-9c9b-2215fbbaa850/",
"/replicates/1631c7ec-3d9d-479c-bf5a-ea1f78da5551/",
"/replicates/9a210020-b2a1-47b8-8bac-841c51d6fc90/",
"/replicates/83eaad99-671a-4191-bac1-f6ef45f655d9/",
"/replicates/d4899f9f-ce3e-4ac3-9df9-fd527a83182d/",
"/replicates/eb09f803-3809-44bd-8370-4bf64eae71a5/",
"/replicates/06f6bedf-399f-4e2f-a504-b72ee3373c99/",
"/replicates/504dad9b-d091-4178-ab8b-867c92b0f835/",
"/replicates/ba0748ee-dbdc-451c-ab9e-116917012431/",
"/replicates/ecd501e7-54f3-452a-b63f-8a513be0e31c/",
"/replicates/1582ff4e-7209-4bb8-b4c2-5a27ad2ac67d/",
"/replicates/b252855f-bd96-445f-89c2-93e707d24a63/",
"/replicates/19114d23-9d0b-434d-ae88-0d83c0d540e4/",
"/replicates/05d0442a-7971-4f25-95e2-ab99425db38b/",
"/replicates/326f4ccb-49b2-4ee0-990c-b7068294045b/",
"/replicates/71b989ae-eb7b-4e68-8324-b3c2d8bfeaca/",
"/replicates/0e0bc8a7-257d-481e-b70a-a03103b1ea62/",
"/replicates/e36a196d-0a4a-4218-8535-7f286a4de448/",
"/replicates/c8a76a7d-9e62-42f4-b55e-4322d38773cb/",
"/replicates/5763fe9b-8594-43d1-b33b-e3170970e2e1/",
"/replicates/f0459f08-98ce-4663-b460-890749951ee2/",
"/replicates/0727c2d1-147c-436c-a0e3-2af20221ce35/",
"/replicates/bc821c70-b294-4d2e-9efc-978de64e0e9b/",
"/replicates/97456332-0e9b-439b-86ef-1e6d06061156/",
"/replicates/2471ac80-808c-4c69-83f3-82a2102a02b7/",
"/replicates/76a52a8f-bf53-49fb-aa92-edd7d97c04fe/",
"/replicates/3ad7d8a7-8368-4c17-a2b8-8b5db102316f/",
"/replicates/b365925f-e00d-4d07-911a-668eb8789dcb/",
"/replicates/171c1fe5-a8c1-4170-b81a-9f0e7c081776/",
"/replicates/1a99a26e-eb27-4080-9a53-47ceb29e895e/",
"/replicates/98f00e73-d8c9-4058-a4b3-2a83eff8a84b/",
"/replicates/25558991-1429-4ffe-aa7a-ad217a4b10f6/",
"/replicates/aaf94a6d-1eea-4030-bd77-c97860f6d5ef/",
"/replicates/46584fed-362f-4fb7-81c6-357c568a0475/",
"/replicates/db4824f2-ad9a-47f6-9df2-ded2c5f75fb7/",
"/replicates/cc468210-e462-4f5c-8d4b-08fae1850390/",
"/replicates/30e7f1b4-a965-40a6-881f-52364fe4c4b4/",
"/replicates/5ddfe11f-b10b-45d9-be88-90c7ed0b1ec8/",
"/replicates/c4a47bf5-8bd0-4b18-a1bd-42316a870bc8/",
"/replicates/b0362793-896b-4fba-b3cb-2823e8861e0e/",
"/replicates/5d817132-b4cc-4331-a408-1b8ad9a9779f/",
"/replicates/272553ad-55b7-4031-888c-77ac2010ff06/",
"/replicates/fc429138-37cd-4b63-9999-b0085510a452/",
"/replicates/8d2aa744-21a5-42b9-b9d0-80fc5dddfacf/",
"/replicates/f3a53d05-cba7-4dd0-a7cf-74d64a8cf71f/",
"/replicates/5edbdba0-048f-4c7d-8d13-f9c62ba4e8b2/",
"/replicates/3652fb92-2ee0-4476-baaf-80dbd26b0dbf/",
"/replicates/e58e37e6-9f9f-4ee8-b1c5-3a158ccdd5e0/",
"/replicates/06c89567-f744-4be0-9ba0-25fcab47165e/",
"/replicates/a2f912ac-59ff-4c2e-ae2d-12329b60e463/",
"/replicates/1e0e124f-b7d2-4a0f-80c8-b936d8720a73/",
"/replicates/8fe60867-ef27-4276-b424-0d76e4c5a33e/",
"/replicates/2a64c650-a9a9-463e-95e2-9c96497dafcc/",
"/replicates/dafe2141-c433-462d-b3d4-6d2bf0d898c3/",
"/replicates/278efa20-ec7e-4687-bef0-7bf2c631ed71/",
"/replicates/765a103a-85e2-486c-96f1-d599e564be32/",
"/replicates/c40b70c2-d5f1-4db7-b0a1-4635e3152fab/",
"/replicates/00c1f28e-a07b-49b0-a3d5-da9577fabf7b/",
"/replicates/bdec0b75-15f6-437e-a8b7-65e8e135af8c/",
"/replicates/f5eea005-8f32-413b-b42f-1c4101320aac/",
"/replicates/260652e7-9695-48d1-8c66-6719a033bb2b/",
"/replicates/3ebc3823-3430-4fe3-802e-18dd08ad3837/",
"/replicates/bb121024-3080-46fb-946b-3a621aacb0be/",
"/replicates/d431cd2f-22fd-44be-add8-0890449b830a/",
"/replicates/bf2a3abb-0c4a-4985-a3f3-fb4e7ecb8ad1/",
"/replicates/e07bca7f-f2eb-4ab9-811c-30d7edcb6720/",
"/replicates/b016f96c-2cdf-4e04-9dc3-2ee86db1a00e/",
"/replicates/349da1c8-9686-476b-9008-920e5a772bc0/",
"/replicates/e9b85e60-a294-44af-8c32-a6b3994e8e51/",
"/replicates/e031ff33-0333-47c7-9ffb-0049ffd60e47/",
"/replicates/5e29c92a-f724-4127-9a13-a0a5290d0720/",
"/replicates/e8a8c3ef-af6c-415b-9134-26ffa929eaf4/",
"/replicates/ada9fad7-b232-4c81-85a1-1ba764294f5c/",
"/replicates/1431c185-6b06-4127-acd7-f3595017d2a2/",
"/replicates/228c71bf-d9ca-4fb2-ad88-10d8e75b54fc/",
"/replicates/171024ec-205b-4bf0-a1e1-a01b9bc78cfb/",
"/replicates/27cccacf-8019-44cb-a8b2-7104cd4b3e88/",
"/replicates/9b95d9f7-c7bb-46e3-9c5b-ce5796f833c0/",
"/replicates/b3b3374b-d724-4675-9376-63623802f952/",
"/replicates/6fe44416-e1c7-4128-b454-da074eac3c58/",
"/replicates/64d5736b-9c04-473f-b433-f27635e387ac/",
"/replicates/29bbe4f2-8aff-4c50-b09f-bc4aded1fa43/",
"/replicates/1ea4d346-6977-41d0-ad38-129fa8767242/",
"/replicates/9f370349-b552-45b2-a732-a9f154446296/",
"/replicates/02d29f93-17aa-4d08-8422-39c5273e6f8e/",
"/replicates/02d8e3d5-5cac-4c25-ab03-fe281f725c26/",
"/replicates/9f665aa0-a1ab-4158-be6e-f41f19de5f15/",
"/replicates/18b311b7-fe21-48e7-9fe1-52d3448b2930/",
"/replicates/457e164d-631e-4866-84b7-986350223d10/",
"/replicates/bb8e0450-62c3-409f-8af7-4b78b8ba4476/",
"/replicates/7817fafc-b005-49d1-ae91-d44670117f4f/",
"/replicates/870f34fd-6739-4349-bbab-9f0a032cfbef/",
"/replicates/7c673cee-add0-4f44-9ca5-d8255b7a0f7a/",
"/replicates/8c46af05-199b-401e-bc6c-ba8f652bc1f4/",
"/replicates/25414ecd-7b36-467d-86b6-40ab88533ab8/",
"/replicates/be3a9841-daac-4143-90f1-460c14fc85ae/",
"/replicates/c07a2839-5da1-4683-a95a-36f360ac92d5/",
"/replicates/8d17ac71-acc7-41e7-86ee-cc450e98b11c/"
],
"biosample_summary": "pancreatic alpha cell female adult (49 years) and male adult (65 years)",
"assay_slims": [
"Transcription"
],
"assay_title": "single cell RNA-seq",
"category_slims": [],
"type_slims": [],
"objective_slims": [],
"related_series": [],
"superseded_by": [],
"replication_type": "anisogenic"
},
"schema_version": "9",
"status": "released",
"date_created": "2018-02-15T01:40:50.220471+00:00",
"submitted_by": "/users/1396e9a3-22b2-42e4-9b19-b874944f9981/",
"biological_replicate_number": 2,
"@id": "/replicates/5ddfe11f-b10b-45d9-be88-90c7ed0b1ec8/",
"@type": [
"Replicate",
"Item"
],
"uuid": "5ddfe11f-b10b-45d9-be88-90c7ed0b1ec8",
"@context": "/policy/",
"audit": {
"INTERNAL_ACTION": [
{
"category": "validation error: ethnicity",
"detail": "Object /human-donors/TSTDO862863%20(East-Asian%20patient%202)/ has schema error 'East-Asian (Chinese)' is not one of ['African', 'African American', 'Arab', 'Arab Indian', 'Asian', 'Asian Hawaiian Eskimo', 'Black', 'Black African', 'Caucasian', 'Caucasian Hispanic', 'Chinese', 'European', 'Eskimo', 'Han Chinese', 'Hawaiian', 'Hispanic', 'Indian', 'Unknown', 'Japanese', 'Pacific Islander', 'Mixed', 'Yoruba']",
"level": 30,
"level_name": "INTERNAL_ACTION",
"path": "/human-donors/TSTDO862863%20(East-Asian%20patient%202)/",
"name": "audit_item_schema"
}
]
}
}