{
"submitted_by": "/users/1396e9a3-22b2-42e4-9b19-b874944f9981/",
"aliases": [
"amp-t2d-consortium:GTEx_replicate_GTEx-ZAKK-0326-SM-5EGHA"
],
"biological_replicate_number": 755,
"experiment": {
"status": "released",
"biosample_term_id": "UBERON:0011907",
"documents": [],
"internal_tags": [],
"references": [],
"dbxrefs": [],
"date_released": "2020-02-05",
"aliases": [
"amp-t2d-consortium:GTEx_experiment_muscleskeletal"
],
"internal_status": "unreviewed",
"date_created": "2019-12-16T19:53:08.525696+00:00",
"schema_version": "16",
"biosample_term_name": "gastrocnemius medialis",
"biosample_type": "tissue",
"related_files": [],
"supersedes": [],
"accession": "DSR306RSE",
"alternate_accessions": [],
"description": "GTEx RNA-seq experiment for muscleskeletal",
"award": "/awards/U01DK100554/",
"submitted_by": "/users/1396e9a3-22b2-42e4-9b19-b874944f9981/",
"assay_term_name": "RNA-seq",
"possible_controls": [],
"lab": "/labs/amp-t2d-consortium/",
"assay_term_id": "OBI:0001271",
"biosample_synonyms": [
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"caput mediale (musculus gastrocnemius)",
"caput mediale musculus gastrocnemii",
"medial head of gastrocnemius"
],
"organ_slims": [
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"limb"
],
"system_slims": [
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],
"developmental_slims": [],
"@id": "/experiments/DSR306RSE/",
"@type": [
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],
"uuid": "1169029e-e2c7-485d-a0e4-ff12dac39312",
"original_files": [
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],
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"files": [
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],
"revoked_files": [],
"assembly": [],
"month_released": "February, 2020",
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],
"biosample_summary": "gastrocnemius medialis female adult (20-29 years) and female adult (30-39 years) and female adult (40-49 years) and female adult (50-59 years) and female adult (60-69 years) and female adult (70-79 years) and male adult (20-29 years) and male adult (30-39 years) and male adult (40-49 years) and male adult (50-59 years) and male adult (60-69 years) and male adult (70-79 years)",
"assay_slims": [
"Transcription"
],
"assay_title": "total RNA-seq",
"category_slims": [
"transcription profiling"
],
"type_slims": [
"transcription profiling assay"
],
"objective_slims": [
"transcription profiling identification objective"
],
"related_series": [],
"superseded_by": [],
"replication_type": "anisogenic"
},
"date_created": "2019-12-16T20:57:16.867878+00:00",
"status": "released",
"library": {
"strand_specificity": false,
"accession": "DLB768ORB",
"date_created": "2019-12-16T20:22:15.205625+00:00",
"documents": [],
"status": "released",
"dbxrefs": [],
"spikeins_used": [],
"nucleic_acid_term_name": "RNA",
"submitted_by": "/users/1396e9a3-22b2-42e4-9b19-b874944f9981/",
"aliases": [
"amp-t2d-consortium:GTEx_library_GTEx-ZAKK-0326-SM-5EGHA"
],
"award": "/awards/U01DK100554/",
"biosample": {
"internal_tags": [],
"aliases": [
"amp-t2d-consortium:GTEx_biosample_GTEx-ZAKK-0326-SM-5EGHA"
],
"biosample_term_name": "gastrocnemius medialis",
"genetic_modifications": [],
"source": "/sources/unknown/",
"biosample_type": "tissue",
"schema_version": "20",
"biosample_term_id": "UBERON:0011907",
"accession": "DBS490ZHB",
"submitted_by": "/users/1396e9a3-22b2-42e4-9b19-b874944f9981/",
"status": "released",
"description": "gastrocnemius medialis GTEx biosample",
"alternate_accessions": [],
"lab": "/labs/amp-t2d-consortium/",
"dbxrefs": [],
"references": [],
"organism": "/organisms/human/",
"date_created": "2019-12-16T19:49:31.368433+00:00",
"treatments": [],
"documents": [],
"award": "/awards/U01DK100554/",
"donor": {
"age": "70-79",
"sex": "male",
"dbxrefs": [],
"status": "released",
"parents": [],
"documents": [],
"submitted_by": "/users/1396e9a3-22b2-42e4-9b19-b874944f9981/",
"life_stage": "adult",
"organism": {
"scientific_name": "Homo sapiens",
"taxon_id": "9606",
"status": "current",
"schema_version": "4",
"name": "human",
"@id": "/organisms/human/",
"@type": [
"Organism",
"Item"
],
"uuid": "2e5a2453-8f03-45ee-82e4-9b7e6c963f43"
},
"award": "/awards/U01DK100554/",
"references": [],
"alternate_accessions": [],
"schema_version": "11",
"age_units": "year",
"aliases": [
"amp-t2d-consortium:GTEx_donor_GTEx-ZAKK"
],
"accession": "DDO464TBJ",
"date_created": "2019-12-11T23:29:14.962271+00:00",
"health_status": "unknown",
"siblings": [],
"lab": "/labs/amp-t2d-consortium/",
"@id": "/human-donors/DDO464TBJ/",
"@type": [
"HumanDonor",
"Donor",
"Item"
],
"uuid": "e8cf2e7e-557f-4edc-98f4-0694d672524f",
"characterizations": [],
"children": []
},
"biosample_synonyms": [
"medial head of gastrocnemius muscle",
"caput mediale (musculus gastrocnemius)",
"caput mediale musculus gastrocnemii",
"medial head of gastrocnemius"
],
"organ_slims": [
"musculature of body",
"limb"
],
"system_slims": [
"musculature of body"
],
"developmental_slims": [],
"@id": "/biosamples/DBS490ZHB/",
"@type": [
"Biosample",
"Item"
],
"uuid": "856b7edb-f273-4f0c-bbb2-4ffe8a4031e1",
"sex": "male",
"age": "70-79",
"age_units": "year",
"health_status": "unknown",
"life_stage": "adult",
"applied_modifications": [],
"characterizations": [],
"parent_of": [],
"age_display": "70-79 year",
"summary": "Homo sapiens gastrocnemius medialis tissue male adult (70-79 years)"
},
"lab": "/labs/amp-t2d-consortium/",
"treatments": [],
"alternate_accessions": [],
"schema_version": "8",
"@id": "/libraries/DLB768ORB/",
"@type": [
"Library",
"Item"
],
"uuid": "14e2163b-2081-4a78-a531-0f39852689d0",
"nucleic_acid_term_id": "SO:0000356"
},
"technical_replicate_number": 1,
"schema_version": "9",
"@id": "/replicates/6110d460-0141-4ae2-a037-16b4912bbd97/",
"@type": [
"Replicate",
"Item"
],
"uuid": "6110d460-0141-4ae2-a037-16b4912bbd97",
"@context": "/policy/",
"audit": {
"INTERNAL_ACTION": [
{
"category": "validation error",
"detail": "Object /human-donors/DDO464TBJ/ has schema error {'age': '70-79', 'sex': 'male', 'dbxrefs': [], 'status': 'released', 'parents': [], 'documents': [], 'submitted_by': '1396e9a3-22b2-42e4-9b19-b874944f9981', 'life_stage': 'adult', 'organism': '2e5a2453-8f03-45ee-82e4-9b7e6c963f43', 'award': 'a02de4e0-42fc-457e-ae99-9b0707f10733', 'references': [], 'alternate_accessions': [], 'schema_version': '11', 'age_units': 'year', 'aliases': ['amp-t2d-consortium:GTEx_donor_GTEx-ZAKK'], 'accession': 'DDO464TBJ', 'date_created': '2019-12-11T23:29:14.962271+00:00', 'health_status': 'unknown', 'siblings': [], 'lab': '8c7ee408-a8e4-4d79-9cc7-10f4b2bc5a4c', 'uuid': 'e8cf2e7e-557f-4edc-98f4-0694d672524f'} is not valid under any of the given schemas",
"level": 30,
"level_name": "INTERNAL_ACTION",
"path": "/human-donors/DDO464TBJ/",
"name": "audit_item_schema"
}
]
}
}