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7
RNA-seq
2
single cell isolation followed by RNA-seq
1
ATAC-seq
1
DNase-seq
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whole genome sequencing assay
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active
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1
ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Software
7
MACS2
BEDTools
6
Samtools
5
Picard
4
Bowtie 2
2
BWA
2
Irreproducible Discovery Rate (IDR)
2
bedGraphToBigWig
2
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2
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2
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2
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2
overlap_peaks.py
2
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1
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1
Trim Galore
1
getVariantOverlap.py
1
makeCandidateRegions.py
1
predict.py
1
run.neighborhoods.py
Developed by
1
Kyle Gaulton, UCSD
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BEDTools
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Pipeline
DPL961ZQY
active
ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays:
ATAC-seq
Software:
Trim Galore, BWA, Samtools, Picard, MACS2