Search – Common Metabolic Diseases Genome Atlas

Showing 8 of 8 results

Pipeline
DPL961ZQY
active
ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays: ATAC-seq
Software: Trim Galore, BWA, Samtools, Picard, MACS2
Pipeline
DPL172PKH
active
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
Assays: RNA-seq
Software: STAR, RSEM
Pipeline
DPL930NXT
active
DNase-seq Pipeline (ENCODE)
Assays: DNase-seq
Software: hotspot2, BEDOPS, BWA, cutadapt, Samtools, Picard, Digital genomic footprinting, bedToBigBed
Pipeline
DPL121OYY
active
ATAC-seq Pipeline Gaulton Lab
Assays: ATAC-seq
Software: BWA, Samtools, Picard, MACS2, BEDTools
Pipeline
DPL450NWL
active
RNA-seq Pipeline Cebola Lab
Assays: RNA-seq
Software: fastp, STAR, SALMON, Samtools, deepTools
Pipeline
DPL118KGX
active
ChIP-seq Pipeline Ellinor Lab
Assays: ChIP-seq
Software: BWA, Picard, MACS2, BEDTools, ChromHMM
Pipeline
DPL610SXT
active
RNA-seq Pipeline (Paired-ended, ENCODE)
Assays: RNA-seq
Software: STAR, bedGraphToBigWig, RSEM
Pipeline
DPL610SXTsingleended
active
RNA-seq Pipeline (Single-ended, ENCODE)
Assays: RNA-seq
Software: STAR, RSEM, bedGraphToBigWig