Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Assay
1
DNase-seq
Pipeline status
1
active
Pipeline groups
1
DNase-seq Pipeline (ENCODE)
Software
3
Picard
3
Samtools
3
bedToBigBed
3
cutadapt
2
BEDTools
Bowtie 2
2
Irreproducible Discovery Rate (IDR)
2
MACS2
2
overlap_peaks.py
2
sambamba
1
BEDOPS
1
BWA
1
Digital genomic footprinting
1
Phantompeakqualtools
1
hotspot2
Developed by
1
AMP-T2D consortium
analysis_steps.versions.software_versions.software.title!
Bowtie 2
Showing 1 of 1 results
table-tab-icon
matrix-icon
Pipeline
DPL930NXT
active
DNase-seq Pipeline (ENCODE)
Assays:
DNase-seq
Software:
hotspot2, BEDOPS, BWA, cutadapt, Samtools, Picard, Digital genomic footprinting, bedToBigBed