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1
ATAC-seq
1
ChIP-seq
1
DNase-seq
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1
active
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1
A short overview of the main analysis steps for eQTL Catalogue
1
ATAC-seq Pipeline (ENCODE replicated)
1
ATAC-seq Pipeline (ENCODE unreplicated)
1
ATAC-seq Pipeline Gaulton Lab
1
ATAC-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
1
Activity by Contact
1
Annotation pipeline popularVote (popV for short) from Tabula Sapiens
1
ChIP-seq Pipeline (ENCODE)
1
ChIP-seq Pipeline Ellinor Lab
1
DNase-seq Pipeline (ENCODE)
1
Histone ChIP-seq Pipeline 2 (ENCODE replicated)
1
Histone ChIP-seq Pipeline 2 (ENCODE unreplicated)
1
Pipeline holder for unknown or undefined pipeline
1
Pseudo-bulk gene expression and differential activity (Elgamal et al.)
1
RNA-seq Pipeline Cebola Lab
1
RNA-seq Pipeline PLoS Genet. 2021-05-13;17(5):e100953
1
TF ChIP-seq Pipeline 2 (ENCODE replicated)
1
TF ChIP-seq Pipeline 2 (ENCODE unreplicated)
1
scRNA-seq clustering for HPAP dataset
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1
BEDTools
1
MACS2
1
getVariantOverlap.py
1
makeCandidateRegions.py
1
predict.py
1
run.neighborhoods.py
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1
AMP-T2D consortium
analysis_steps.versions.software_versions.software.title!
bedGraphToBigWig
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Pipeline
DPL010CNP
active
Activity by Contact
Assays:
ATAC-seq, ChIP-seq, DNase-seq
Software:
MACS2, BEDTools, makeCandidateRegions.py, run.neighborhoods.py, predict.py, getVariantOverlap.py