Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema
Clear Filters
Assay
  • 1DNase-seq
Pipeline status
  • 1active
Pipeline groups
  • 1DNase-seq Pipeline (ENCODE)
Software
  • 3Picard
  • 3Samtools
  • 3bedToBigBed
  • 3cutadapt
  • 2BEDTools
  • 2Bowtie 2
  • 2Irreproducible Discovery Rate (IDR)
  • 2MACS2
  • overlap_peaks.py
  • 2sambamba
  • 1BEDOPS
  • 1BWA
  • 1Digital genomic footprinting
  • 1Phantompeakqualtools
  • 1hotspot2
Developed by
  • 1AMP-T2D consortium
analysis_steps.versions.software_versions.software.title!
  • overlap_peaks.py

Showing 1 of 1 results

table-tab-iconmatrix-icon

  • Pipeline

    DPL930NXT

    active

    DNase-seq Pipeline (ENCODE)
    Assays: DNase-seq
    Software: hotspot2, BEDOPS, BWA, cutadapt, Samtools, Picard, Digital genomic footprinting, bedToBigBed
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego