Showing 3 of 3 results

• Pipeline

  DPL930NXT

  active

  DNase-seq Pipeline (ENCODE)

  Assays: DNase-seq

  Software: hotspot2, BEDOPS, BWA, cutadapt, Samtools, Picard, Digital genomic footprinting, bedToBigBed

• Pipeline

  DPL707AXE

  active

  ATAC-seq Pipeline (ENCODE replicated)

  Assays: ATAC-seq

  Software: Bowtie 2, Samtools, Picard, cutadapt, sambamba, overlap_peaks.py, bedToBigBed, Irreproducible Discovery Rate (IDR), BEDTools, MACS2, Phantompeakqualtools

• Pipeline

  DPL967MZM

  active

  ATAC-seq Pipeline (ENCODE unreplicated)

  Assays: ATAC-seq

  Software: Bowtie 2, Samtools, Picard, cutadapt, sambamba, Irreproducible Discovery Rate (IDR), overlap_peaks.py, MACS2, BEDTools, bedToBigBed