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Assay
2
ATAC-seq
1
ChIP-seq
1
RNA-seq
Pipeline status
2
active
Pipeline groups
1
ATAC-seq Pipeline Cebola Lab
1
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
Software
7
MACS2
6
BEDTools
6
Samtools
5
Picard
4
Bowtie 2
2
BWA
2
Irreproducible Discovery Rate (IDR)
2
bedGraphToBigWig
2
bedToBigBed
2
cutadapt
2
deepTools
2
fastp
2
overlap_peaks.py
2
sambamba
1
Phantompeakqualtools
1
Trim Galore
1
getVariantOverlap.py
1
makeCandidateRegions.py
1
predict.py
1
run.neighborhoods.py
Developed by
2
Ines Cebola, Imperial College London
Showing 2 of 2 results
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Pipeline
DPL779IGH
active
ATAC-seq Pipeline Cebola Lab (Hepatocytes)
Assays:
ATAC-seq
Software:
fastp, Bowtie 2, Samtools, BEDTools, deepTools, MACS2, bedGraphToBigWig
Pipeline
DPL741HGX
active
ATAC-seq Pipeline Cebola Lab
Assays:
ATAC-seq
Software:
fastp, Bowtie 2, Samtools, Picard, BEDTools, deepTools, MACS2, bedGraphToBigWig