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1
ATAC-seq
1
ChIP-seq
1
DNase-seq
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active
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17
Samtools
15
MACS2
14
BEDTools
13
Bowtie 2
12
Picard
8
bedGraphToBigWig
8
bedToBigBed
8
cutadapt
7
sambamba
6
STAR
5
RSEM
5
overlap_peaks.py
4
BWA
4
Irreproducible Discovery Rate (IDR)
4
deepTools
4
fastp
4
ptools_bin
3
Phantompeakqualtools
2
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2
RNA pipelines
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lrna-index-rsem
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lrna-index-star
2
lrna-index-tophat
2
lrna-mad-qc
2
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1
Association testing and fine mapping: eQTL-Catalogue/qtlmap
1
BEDOPS
1
ChromHMM
1
CoLo
1
Digital genomic footprinting
1
Gene expression QC and normalisation: eQTL-Catalogue/qcnorm
1
Genotype QC and imputation: eQTL-Catalogue/genimpute
1
RNA-seq quantification: eQTL-Catalogue/rnaseq
1
SALMON
1
SRA_Toolkit
1
Tophat BAM Repair
1
Trim Galore
1
getVariantOverlap.py
1
hotspot2
1
lrna-align-star-pe
1
lrna-align-star-se
1
lrna-align-tophat-pe
1
lrna-align-tophat-se
1
lrna-signals-stranded
1
lrna-signals-unstranded
1
makeCandidateRegions.py
1
predict.py
1
run.neighborhoods.py
1
unknown
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AMP-T2D consortium
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Model
Showing 1 of 1 results
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Pipeline
DPL010CNP
active
Activity by Contact
Assays:
ATAC-seq, ChIP-seq, DNase-seq
Software:
MACS2, BEDTools, makeCandidateRegions.py, run.neighborhoods.py, predict.py, getVariantOverlap.py