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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
Annotation Category
cis-regulatory elements
Gene expression levels
2
Target gene links
Annotation type Category
1
pCHi-C
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
54
HeLa-S3
38
H1-hESC
22
K562
22
heart
21
islet of Langerhans
20
stomach
19
HFFc6
19
brain
18
A549
18
lung
17
liver
17
muscle of arm
17
small intestine
16
adrenal gland
16
kidney
15
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
macrophage
13
muscle of back
13
muscle of leg
13
thymus
12
adipose tissue
11
right kidney
11
right lung
10
coronary artery
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
monocyte
10
renal cortex interstitium
10
renal pelvis
10
subcutaneous adipose tissue
10
tibial nerve
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
body of pancreas
9
caudate nucleus
9
left kidney
9
neutrophil
9
right atrium auricular region
9
tibial artery
8
T cell
8
fibroblast
8
frontal cortex
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
putamen
8
spinal cord
8
spleen
8
substantia nigra
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
ascending aorta
7
cerebellum
7
lymphocyte
7
omental fat pad
7
psoas muscle
6
Ammon's horn
6
endothelial cell
6
heart right ventricle
6
iPSC derived cell line
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
pancreas
6
regulatory T cell
6
sigmoid colon
5
MCF-7
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
hypothalamus
5
mesenchymal stem cell
5
natural killer cell
5
neural progenitor cell
5
nucleus accumbens
5
retina
5
right lobe of liver
5
skeletal muscle tissue
smooth muscle cell
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
aorta
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
esophagus
4
foreskin keratinocyte
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
hepatocyte
4
layer of hippocampus
4
left ventricle myocardium
4
mammary gland epithelial cell
4
muscle of trunk
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
skin of body
4
testis
3
HCT116
3
Peyer's patch
3
activated CD4-positive, alpha-beta T cell
3
adipocyte
3
blood cell
3
cardiac muscle cell
3
chorion membrane
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
esophagus muscularis mucosa
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
left renal cortex interstitium
3
left renal pelvis
3
myofibroblast cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
prostate gland
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle myoblast
3
thoracic aorta
3
trophoblast
3
upper lobe of left lung
3
vagina
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
EndoC_BH1
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
HepG2
2
LNCaP clone FGC
2
MIN6
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
Schwann cell
2
T47D
2
activated CD8-positive, alpha-beta T cell
2
angular gyrus
2
articular chondrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
blood
2
breast epithelium
2
bronchial epithelial cell
2
cardiac precursors (cardiac muscle cell)
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
endodermal cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
foreskin fibroblast
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
goblet cell
2
hepatic stellate cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
limb
Date released
1
January, 2021
1
May, 2020
Software used
abc
1
chicago
1
cicero
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
1
AMP
1
T1D
RFA
1
AMP
1
T1D
annotation_category!
Gene expression levels
cis-regulatory elements
biosample_term_name!
smooth muscle cell
software_used.software.name!
abc
Showing 2 of 2 results
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Download
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP