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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
Gene expression levels
2
cis-regulatory elements
1
Target gene links
Annotation type Category
ATAC-seq
2
ChIP-seq
1
HiC
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
100
monocyte
65
heart
64
stomach
60
HeLa-S3
54
brain
51
kidney
51
lung
51
muscle of arm
47
small intestine
45
adrenal gland
45
placenta
43
A549
43
H1-hESC
42
CD8-positive, alpha-beta T cell
42
large intestine
42
muscle of leg
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
36
thymus
34
right lung
33
K562
33
liver
32
hematopoietic multipotent progenitor cell
32
right kidney
31
B cell
31
renal cortex interstitium
31
renal pelvis
30
neural progenitor cell
28
macrophage
27
fibroblast
27
left kidney
27
spinal cord
25
islet of Langerhans
25
spleen
24
endothelial cell
23
CD4-positive, alpha-beta memory T cell
23
heart left ventricle
20
MCF-7
20
breast cancer cell
19
HFFc6
19
adipose tissue
18
T cell
18
foreskin keratinocyte
17
body of pancreas
17
tibial nerve
16
foreskin fibroblast
16
pancreas
16
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
caudate nucleus
15
hepatocyte
15
natural killer cell
15
ovary
15
regulatory T cell
15
retina
15
smooth muscle cell
14
H9
14
keratinocyte
14
mononuclear cell
14
psoas muscle
14
transverse colon
13
GM12878
13
HepG2
13
cardiac muscle cell
13
gastrocnemius medialis
13
mesenchymal stem cell
13
neutrophil
13
putamen
13
substantia nigra
13
testis
13
thyroid gland
13
upper lobe of left lung
12
CD14-positive monocyte
12
endothelial cell of umbilical vein
12
fibroblast of cardiac tissue
12
heart right ventricle
12
layer of hippocampus
12
lymphoblastoid cell line
12
neuroblastoma cell
12
omental fat pad
12
pericyte cell
12
prostate gland
12
right atrium auricular region
12
skeletal muscle tissue
11
CD4-positive, alpha-beta T cell
11
chorionic villus
11
excitatory neuron
11
muscle of trunk
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
osteoblast
11
pancreatic ductal cell
11
tibial artery
10
Ammon's horn
10
Peyer's patch
10
Rhabdomyosarcoma
10
adipocyte
10
ascending aorta
10
bronchial epithelial cell
10
cerebellum
10
coronary artery
10
endocrine pancreas
10
frontal cortex
10
gastric cancer cell
10
left renal cortex interstitium
10
mammary epithelial cell
10
mammary gland epithelial cell
10
right renal pelvis
10
skeletal muscle myoblast
10
subcutaneous adipose tissue
9
T-helper 1 cell
9
astrocyte
9
diffuse intrinsic pontine glioma
9
fibroblast of lung
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neuronal stem cell
9
neurosphere
9
pancreatic beta cell
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
choroid plexus epithelial cell
8
epithelial cell of prostate
8
esophagus
8
fibroblast cell line
8
fibroblast of dermis
8
pancreatic alpha cell
8
skeletal muscle satellite cell
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
IMR-90
7
T-helper 17 cell
7
aorta
7
breast epithelium
7
endothelial cell of hepatic sinusoid
7
erythroblast
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
hepatic stellate cell
7
kidney tubule cell
7
lower leg skin
7
pancreatic acinar cell
7
pancreatic delta cell
7
retinal pigment epithelial cell
7
skin fibroblast
7
temporal lobe
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HAP-1
6
HL-60
6
HT-29
6
HUES8
6
NAMALWA cell
6
SK-N-MC
6
T-helper 2 cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of pulmonary artery
6
globus pallidus
6
hESC cell
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
mesendoderm
6
neuroblastoma cell line
6
parathyroid adenoma
6
right renal cortex interstitium
6
tongue
5
cardiac fibroblast
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
HCT116
5
HuH-7
5
Jurkat
Organ
1
epithelium
1
pancreas
Date released
2
February, 2021
1
March, 2020
Software used
2
macs
1
hiccups
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_category!
Gene expression levels
annotation_type!
chromatin state
annotation_type_category!
ATAC-seq
biosample_term_name!
mesendoderm
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR257RKK
released
Annotation file set
: Histone modifications annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170VOW
released
Annotation file set
: Binding sites annotation for Pancreas EndoC-BH1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP