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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Gene expression levels
1
Target gene links
Annotation type Category
DNase-seq
4
ChIP-seq
2
ATAC-seq
1
snATAC-seq
Available data
3
bed bed3+
2
bigWig
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
113
monocyte
38
CD8-positive, alpha-beta T cell
30
endothelial cell
29
fibroblast
26
macrophage
20
pericyte cell
19
smooth muscle cell
15
B cell
14
T cell
14
hepatocyte
13
common myeloid progenitor, CD34-positive
12
astrocyte
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
pancreatic beta cell
11
keratinocyte
11
pancreatic alpha cell
11
pancreatic ductal cell
11
regulatory T cell
10
erythroblast
10
pancreatic delta cell
9
CD4-positive, alpha-beta memory T cell
9
mature neutrophil
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
natural killer cell
9
neutrophil
9
pancreatic acinar cell
8
endothelial cell of umbilical vein
8
glutamatergic neuron
8
mammary epithelial cell
8
osteoblast
8
skeletal muscle satellite cell
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
foreskin fibroblast
7
mammary gland epithelial cell
7
mononuclear cell
7
skeletal muscle fiber
7
type II pneumocyte
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
memory B cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
skeletal muscle myoblast
6
type I muscle cell
6
type II muscle cell
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
basal cell
5
bronchial epithelial cell
5
gabaergic neuron
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mast cell
5
mesenchymal stem cell
5
myofibroblast cell
5
naive B cell
5
plasma cell
5
retinal pigment epithelial cell
5
trophoblast cell
4
CD14-positive monocyte
4
activated CD4-positive, alpha-beta T cell
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of dermis
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
foreskin keratinocyte
4
inflammatory macrophage
4
megakaryocyte
4
mesothelial cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
tracheal epithelial cell
4
type I pneumocyte
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
T follicular helper cell
3
activated CD8-positive, alpha-beta T cell
3
adipocyte
3
aortic adventitial fibroblast
3
blood cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epithelial cell of esophagus
3
goblet cell
3
hepatic stellate cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive T cell
3
naive t cell
3
neurosphere
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary artery endothelial cell
3
renal epithelial cell
3
schwann cell
3
thyroid follicular cell
2
Adipose stromal cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Ishikawa
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th1 cell
2
Th17 cell
2
acute myeloid leukemia cell
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
erythroid cell
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fat cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
glomerular visceral epithelial cell
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukemic stem cell
2
leukocyte
2
luteal cell
2
mantle cell lymphoma cell
2
mature NK T cell
2
mature natural killer cell
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
2
myoepithelial cell
2
myoepithelial cell of mammary gland
2
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
2
neoplastic cell
2
neuron
2
neuronal stem cell
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
pancreatic A cell
2
pancreatic endocrine cell
2
paneth cell
2
peripheral blood mononuclear cell
2
peripheral blood stem cell
2
peripheral blood-derived erythroblast
2
prostate gland cancer cell
2
pulmonary interstitial fibroblast
2
regular atrial cardiac myocyte
2
renal proximal tubule cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
small cell ovarian carcinoma cell
2
small intestine goblet cell
Organ
2
epithelium
2
kidney
Life stage
2
adult
Date released
2
November, 2021
1
January, 2020
1
September, 2022
Software used
2
macs
1
abc
1
chromhmm
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
annotation_category!
Gene expression levels
annotation_type_category!
DNase-seq
Showing 4 of 4 results
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Download
FileSet
DSR902NXV
released
Annotation file set
: Chromatin states for BSS01092 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922IZF
released
Annotation file set
: Target gene predictions of Atrial Cardiomyocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR861HQN
released
Annotation file set
: Accessible chromatin annotation of Atrial Cardiomyocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR717HZO
released
Annotation file set
: Accessible chromatin annotation of kidney glomerular epithelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP