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Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
1
eQTL
Annotation Category
3
cis-regulatory elements
Gene expression levels
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
1
RNA-seq
Available data
bed bed3+
3
bed bed9
File set status
4
released
Genome assembly (visualization)
4
GRCh38
3
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
21
heart
20
brain
20
stomach
17
islet of Langerhans
17
lung
16
kidney
16
muscle of arm
16
small intestine
15
adrenal gland
15
liver
15
muscle of leg
15
placenta
13
large intestine
13
left lung
13
muscle of back
11
right kidney
11
right lung
11
thymus
9
adipose tissue
9
caudate nucleus
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
tibial nerve
8
body of pancreas
8
coronary artery
8
putamen
8
spinal cord
8
subcutaneous adipose tissue
8
substantia nigra
8
tibial artery
7
ascending aorta
7
cerebellum
7
frontal cortex
7
omental fat pad
7
right atrium auricular region
7
spleen
5
Ammon's horn
5
amygdala
5
anterior cingulate cortex
5
heart right ventricle
5
hypothalamus
5
nucleus accumbens
5
ovary
5
right lobe of liver
5
sigmoid colon
5
skeletal muscle tissue
5
thyroid gland
5
transverse colon
4
C1 segment of cervical spinal cord
4
angular gyrus
4
aorta
4
cerebellum (Hemisphere)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
layer of hippocampus
4
left ventricle myocardium
4
muscle of trunk
4
psoas muscle
4
retina
4
skin of body
4
temporal lobe
4
testis
3
Peyer's patch
3
chorion membrane
3
esophagus
3
esophagus muscularis mucosa
3
left renal cortex interstitium
3
pancreas
3
prostate gland
3
right cardiac atrium
3
right renal cortex interstitium
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
Brodmann (1909) area 46
2
blood
2
breast epithelium
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
esophagus squamous epithelium
2
eye
2
germinal matrix
2
globus pallidus
2
left renal pelvis
2
limb
2
lower leg skin
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
parathyroid adenoma
2
pons
2
right renal pelvis
2
stomach smooth muscle
2
superior temporal gyrus
2
tongue
2
trophoblast
2
urinary bladder
2
uterus
1
Pancreatic islets
1
abdominal aorta artery
1
amnion
1
arm bone
1
breast
1
cerebellar cortex
1
cerebellar hemisphere
1
colon sigmoid
1
cortex
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
embryonic facial prominence
1
esophagus mucosa
1
femur
1
gastroesophageal sphincter
1
germinal center
1
inferior parietal cortex
1
left cardiac atrium
1
leg bone
1
minor salivary gland
1
mucosa of stomach
1
occipital lobe
1
pituitary gland
1
rectum smooth muscle tissue
1
renal glomerulus
1
umbilical cord
1
visceral abdominal adipose tissue
Organ
4
gonad
4
testis
Life stage
2
adult
1
embryonic
Date released
3
September, 2022
1
January, 2022
Software used
3
chromhmm
1
qTLtools
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_category!
Gene expression levels
award.project!
ITG
files.file_type!
bed bed3+
Showing 4 of 4 results
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Download
FileSet
DSR845ZVQ
released
Annotation file set
: Chromatin states for BSS01719 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR211VUO
released
Annotation file set
: Chromatin states for BSS01718 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR666MOR
released
Annotation file set
: Chromatin states for BSS01715 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR823HJA
released
Annotation file set
: testis eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP