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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
snATAC-seq
Available data
4
bed bed3+
4
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
23
endothelial cell
20
fibroblast
19
pericyte cell
16
smooth muscle cell
14
macrophage
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
9
astrocyte
8
kidney
7
hepatocyte
6
T cell
6
colon epithelial cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
type II pneumocyte
5
cortical cell of adrenal gland
5
erythroblast
5
inhibitory neuron
5
pancreatic ductal cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
5
type I muscle cell
5
type II muscle cell
4
B cell
4
CD8-positive, alpha-beta T cell
4
blood vessel smooth muscle cell
4
cartilage tissue
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
keratinocyte
4
luminal epithelial cell of mammary gland
4
memory B cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
CD4-positive helper T cell
3
basal cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
megakaryocyte
3
mesenchymal stem cell
3
mesothelial cell
3
natural killer cell
3
oligodendrocyte precursor cell
3
schwann cell
2
CD4-positive, alpha-beta T cell
2
Muller cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adipocyte
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
glial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
luteal cell
2
mammary gland epithelial cell
2
mast cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
monocyte
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
pancreatic A cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type B pancreatic cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
embryonic stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
gastric goblet cell
1
glomerular visceral epithelial cell
1
goblet cell
1
hepatic stellate cell
1
hepatoblast
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukocyte
1
lung neuroendocrine cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
metanephros
1
myofibroblast cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
proximal tubule cells with injury markers
1
purified protein and synthetic DNA oligo binding assay
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
sympathetic neuron
1
synovial joint
1
trophoblast giant cell
1
undifferentiated ESC (H9 cell line)
1
ureteric bud
Date released
3
November, 2021
1
April, 2020
Software used
3
macs
Lab
3
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
3
ENCODE
1
LungMap
RFA
AMP
3
ENCODE3
1
LungMap2
annotation_category!
Gene expression levels
award.rfa!
AMP
biosample_term_name!
heart left ventricle
pituitary stalk
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR608YQN
released
Annotation file set
: ATAC-seq peaks in B cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR995HIR
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 3 (NPY+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143LGZ
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 2 (CXCR5+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR114OHW
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 1 (SPIB+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE