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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
chromatin state
1
histone modifications
Annotation Category
Gene expression levels
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
4
DNase-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
1
bed bed9
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
116
monocyte
87
heart
85
stomach
74
kidney
72
brain
67
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
thymus
47
liver
46
CD8-positive, alpha-beta T cell
46
H1-hESC
45
right lung
44
neural progenitor cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
39
B cell
39
retina
36
left kidney
35
spinal cord
33
heart left ventricle
33
islet of Langerhans
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
29
adipose tissue
26
MCF-7
23
adipocyte
23
sigmoid colon
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
foreskin keratinocyte
22
hepatocyte
22
pancreas
21
caudate nucleus
21
natural killer cell
21
regulatory T cell
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
19
coronary artery
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
macrophage
19
ovary
18
HFFc6
18
T cell
18
gastrocnemius medialis
18
heart right ventricle
18
mesenchymal stem cell
18
thyroid gland
18
transverse colon
17
HepG2
17
cardiac muscle cell
17
embryonic stem cell
17
keratinocyte
17
muscle of trunk
17
right atrium auricular region
17
tibial artery
16
GM12878
16
chorionic villus
16
fibroblast of lung
16
layer of hippocampus
16
substantia nigra
16
testis
16
upper lobe of left lung
15
T-helper 1 cell
15
neutrophil
15
omental fat pad
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
15
skeletal muscle tissue
15
subcutaneous adipose tissue
14
H9
14
T-helper 17 cell
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
endothelial cell
14
mammary gland epithelial cell
14
osteoblast
14
prostate gland
14
putamen
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
bronchial epithelial cell
13
cerebellum
13
fibroblast of cardiac tissue
13
neurosphere
12
EndoC_BH1
12
aorta
12
fibroblast
12
fibroblast of dermis
12
frontal cortex
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic ductal cell
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
right renal cortex interstitium
10
smooth muscle cell
10
thoracic aorta
10
trophoblast
9
HEK293
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
esophagus
9
kidney tubule cell
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic beta cell
8
pituitary stalk
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
pancreatic acinar cell
pancreatic alpha cell
7
right lobe of liver
7
skeletal muscle satellite cell
7
skin fibroblast
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
Chondroid Chordoma
Life stage
4
unknown
1
embryonic
Date released
3
September, 2022
2
February, 2021
1
January, 2022
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
ENCODE3
7
AMP
annotation_category!
Gene expression levels
award.rfa!
ENCODE3
biosample_term_name!
pancreatic alpha cell
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR223CRF
released
Annotation file set
: Candidate regulatory elements for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR903FVP
released
Annotation file set
: Target gene predictions for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR424EJT
released
Annotation file set
: Chromatin states for BSS00089 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR846FJI
released
Annotation file set
: Accessible chromatin annotation from ATAC-seq_human primary fetal astrocytes batch 2; Homo sapiens; ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR488ZSW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR720CZQ
released
Annotation file set
: Histone modifications annotation for Neural Astrocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR031ZTG
released
Annotation file set
: enhancer-gene predicton of astrocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP