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Citing CMDGA
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Annotation type
1
target gene predictions
1
variant allelic effects
Annotation Category
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
1
ATAC-seq
1
HiC
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
81
stomach
80
heart
67
lung
66
brain
66
muscle of arm
64
HeLa-S3
62
small intestine
61
kidney
60
adrenal gland
59
A549
56
muscle of leg
56
placenta
54
common myeloid progenitor, CD34-positive
54
large intestine
54
muscle of back
52
left lung
45
thymus
44
right lung
43
H1-hESC
42
right kidney
40
liver
39
hematopoietic multipotent progenitor cell
39
renal cortex interstitium
38
B cell
38
K562
38
renal pelvis
36
left kidney
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
spinal cord
29
heart left ventricle
29
spleen
27
islet of Langerhans
26
adipose tissue
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
sigmoid colon
21
MCF-7
21
trophoblast cell
20
natural killer cell
20
tibial nerve
19
HFFc6
19
adipocyte
19
foreskin keratinocyte
19
macrophage
19
mononuclear cell
19
psoas muscle
18
caudate nucleus
18
endothelial cell of umbilical vein
18
ovary
17
T cell
17
coronary artery
17
gastrocnemius medialis
17
heart right ventricle
17
muscle of trunk
17
thyroid gland
17
transverse colon
16
H9
16
chorionic villus
16
fibroblast
16
fibroblast of lung
16
regulatory T cell
15
CD8-positive, alpha-beta T cell
15
T-helper 1 cell
15
endocrine pancreas
15
endothelial cell
15
smooth muscle cell
15
substantia nigra
14
CD4-positive, alpha-beta T cell
14
T-helper 17 cell
14
T-helper 2 cell
14
ascending aorta
14
foreskin fibroblast
14
layer of hippocampus
14
omental fat pad
14
pancreas
14
retina
14
right atrium auricular region
14
skeletal muscle tissue
14
tibial artery
13
GM12878
13
Peyer's patch
13
mesenchymal stem cell
13
neural progenitor cell
13
neurosphere
13
neutrophil
13
pericyte cell
13
subcutaneous adipose tissue
12
aorta
12
cardiac muscle cell
12
cerebellum
12
fibroblast of dermis
12
frontal cortex
12
keratinocyte
12
left renal cortex interstitium
12
upper lobe of left lung
11
hepatocyte
11
mammary gland epithelial cell
11
putamen
11
skeletal muscle myoblast
10
SK-N-SH
10
angular gyrus
10
breast epithelium
10
dermis blood vessel endothelial cell
10
esophagus
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
fibroblast of cardiac tissue
10
left cardiac atrium
10
left renal pelvis
10
monocyte
10
right renal cortex interstitium
10
temporal lobe
9
Ammon's horn
9
HepG2
9
chorion membrane
9
cingulate gyrus
9
colonic mucosa
9
duodenal mucosa
9
endometrium adenocarcinoma
9
epithelial cell of prostate
9
immortal human breast epithelial cell line cell
9
lower leg skin
9
lymphocyte
9
parathyroid adenoma
9
right renal pelvis
9
thoracic aorta
8
22Rv1
8
SK-N-DZ
8
bronchial epithelial cell
8
endodermal cell
8
eye
8
fibroblast of breast
8
myoepithelial cell of mammary gland
8
naive T cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
pituitary stalk
8
prostate gland
8
tongue
8
vagina
7
LNCaP clone FGC
7
T47D
7
WI38
7
astrocyte
7
dendritic cell
7
gastroesophageal sphincter
7
limb
7
right lobe of liver
7
stomach smooth muscle
7
trophoblast
6
Brodmann (1909) area 46
6
HCT116
6
HEK293
6
IMR-90
6
NAMALWA cell
6
T-cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
dermis lymphatic vessel endothelial cell
6
embryonic stem cell
6
epithelial cell of esophagus
6
epithelial cell of proximal tubule
6
erythroblast
6
foreskin melanocyte
6
iPSC derived cell line
6
kidney tubule cell
6
lymphoblastoid cell line
6
mammary epithelial cell
6
mucosa of rectum
6
skeletal muscle satellite cell
6
uterus
5
A673
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
GM06990
5
GM08714
5
GM12864
5
GM12865
5
GM12875
5
GM19238
5
GM19239
5
GM19240
5
HAP-1
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
MM.1S
5
NB4
5
OCI-LY7
5
PC-9
5
Panc1
5
SK-N-MC
5
WERI-Rb-1
5
alternatively activated macrophage
5
amygdala
5
anterior cingulate cortex
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
bipolar neuron
5
cerebellum (Hemisphere)
Organ
2
epithelium
2
pancreas
Date released
1
March, 2020
1
May, 2020
Software used
macs
6
deseq2
6
samtools
1
deltasvm
1
hiccups
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_category!
Gene expression levels
organ_slims!
testis
software_used.software.name!
macs
Showing 2 of 2 results
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Download
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP