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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
Gene expression levels
1
Genetic variant effects
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
22
in vitro differentiated cells
3
primary cell
Biosample term
115
monocyte
54
common myeloid progenitor, CD34-positive
47
CD8-positive, alpha-beta T cell
38
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
endothelial cell
29
fibroblast
26
macrophage
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
pericyte cell
21
regulatory T cell
20
hepatocyte
20
mononuclear cell
19
foreskin keratinocyte
19
natural killer cell
19
smooth muscle cell
18
endothelial cell of umbilical vein
18
trophoblast cell
17
keratinocyte
16
T-helper 1 cell
16
astrocyte
16
fibroblast of lung
16
foreskin fibroblast
15
CD4-positive, alpha-beta T cell
15
neutrophil
15
osteoblast
15
skeletal muscle myoblast
14
T-helper 17 cell
14
T-helper 2 cell
13
mammary epithelial cell
13
mammary gland epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
pancreatic ductal cell
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
pancreatic beta cell
11
erythroblast
11
pancreatic alpha cell
10
dermis blood vessel endothelial cell
10
pancreatic acinar cell
10
pancreatic delta cell
10
retinal pigment epithelial cell
10
skeletal muscle satellite cell
9
epithelial cell of prostate
9
kidney tubule cell
9
mature neutrophil
9
naive T cell
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
hepatic stellate cell
8
myoepithelial cell of mammary gland
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
epithelial cell of proximal tubule
7
glomerular endothelial cell
7
kidney glomerular epithelial cell
7
luminal epithelial cell of mammary gland
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
skeletal muscle fiber
7
type II pneumocyte
6
T-cell
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
glomerular visceral epithelial cell
6
kidney epithelial cell
6
memory B cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
alternatively activated macrophage
5
basal cell
5
brain microvascular endothelial cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
lung microvascular endothelial cell
5
mast cell
5
mesenchymal stem cell
5
myofibroblast cell
5
naive B cell
5
non-pigmented ciliary epithelial cell
5
plasma cell
5
tracheal epithelial cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
megakaryocyte
4
mesothelial cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
3
Ishikawa
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
adipocyte
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
goblet cell
3
mammary stem cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th2 cell
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fat cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
Organ
3
connective tissue
Date released
2
February, 2024
1
November, 2021
Software used
2
macs
1
deltasvm
Lab
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
2
AMP
1
ENCODE
RFA
1
AMP
1
AMP2
1
ENCODE3
annotation_category!
Gene expression levels
biosample_term_name!
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
files.file_type!
bigBed bed9
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP