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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
1
target gene predictions
Annotation Category
Gene expression levels
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
snATAC-seq
Available data
5
bed bed3+
4
bigWig
1
bigBed narrowPeak
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
tissue
Biosample term
116
monocyte
87
heart
85
stomach
74
kidney
72
brain
67
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
CD8-positive, alpha-beta T cell
48
thymus
47
liver
46
H1-hESC
45
right lung
44
neural progenitor cell
42
B cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
39
retina
36
left kidney
35
spinal cord
34
islet of Langerhans
33
heart left ventricle
33
spleen
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
31
CD14-positive monocyte
31
endothelial cell
30
macrophage
29
adipose tissue
26
MCF-7
24
adipocyte
24
hepatocyte
23
sigmoid colon
23
smooth muscle cell
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
body of pancreas
22
foreskin keratinocyte
22
pancreas
pericyte cell
21
caudate nucleus
21
keratinocyte
21
natural killer cell
21
regulatory T cell
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
19
coronary artery
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
ovary
18
HFFc6
18
gastrocnemius medialis
18
heart right ventricle
18
mesenchymal stem cell
18
thyroid gland
18
transverse colon
17
HepG2
17
cardiac muscle cell
17
embryonic stem cell
17
muscle of trunk
17
right atrium auricular region
17
tibial artery
16
GM12878
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
layer of hippocampus
16
retinal pigment epithelial cell
16
substantia nigra
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
T-helper 1 cell
15
astrocyte
15
mammary gland epithelial cell
15
neutrophil
15
omental fat pad
15
pancreatic ductal cell
15
skeletal muscle myoblast
15
skeletal muscle tissue
15
subcutaneous adipose tissue
14
H9
14
T-helper 17 cell
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
osteoblast
14
prostate gland
14
putamen
13
Peyer's patch
13
bronchial epithelial cell
13
cerebellum
13
neurosphere
12
EndoC_BH1
12
aorta
12
excitatory neuron
12
fibroblast of dermis
12
frontal cortex
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic beta cell
11
Ammon's horn
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
epithelial cell of prostate
11
erythroblast
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic acinar cell
11
right renal pelvis
11
skeletal muscle satellite cell
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
pancreatic alpha cell
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
hepatic stellate cell
9
kidney tubule cell
9
liposarcoma
9
pancreatic delta cell
parathyroid adenoma
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
Organ
5
connective tissue
5
pancreas
Life stage
1
adult
Date released
2
February, 2024
2
January, 2021
1
June, 2021
Software used
4
macs
1
cicero
Lab
5
Kyle Gaulton, UCSD
Project
3
AMP
2
T1D
RFA
3
AMP
2
T1D
annotation_category!
Gene expression levels
biosample_term_name!
parathyroid adenoma
pericyte cell
Showing 5 of 5 results
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Download
FileSet
DSR242BFD
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Quiescent Stellate
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR972BOL
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Active Stellate
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR457TFN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of activated_stellate
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR223BJV
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of activated_stellate
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR364QCE
released
Annotation file set
: pancreatic stellate cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP