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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
caQTL
1
histone modifications
Annotation Category
Gene expression levels
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
2
snATAC-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
113
monocyte
86
heart
83
stomach
72
brain
67
muscle of arm
66
kidney
66
lung
63
HeLa-S3
61
A549
61
small intestine
59
placenta
58
adrenal gland
57
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
46
thymus
45
right lung
44
H1-hESC
43
neural progenitor cell
42
CD8-positive, alpha-beta T cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
liver
40
renal cortex interstitium
40
renal pelvis
39
K562
39
retina
37
B cell
36
left kidney
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
31
heart left ventricle
30
islet of Langerhans
30
spleen
27
adipose tissue
25
MCF-7
22
CD8-positive, alpha-beta memory T cell
22
foreskin keratinocyte
21
sigmoid colon
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
20
tibial nerve
20
trophoblast cell
19
HFFc6
19
regulatory T cell
18
body of pancreas
18
foreskin fibroblast
18
pancreas
17
gastrocnemius medialis
17
ovary
17
thyroid gland
17
transverse colon
16
CD14-positive monocyte
16
chorionic villus
16
endothelial cell of umbilical vein
16
heart right ventricle
16
muscle of trunk
16
natural killer cell
16
psoas muscle
16
testis
16
upper lobe of left lung
15
H9
15
T-helper 1 cell
15
cardiac muscle cell
15
caudate nucleus
15
coronary artery
15
embryonic stem cell
15
hepatocyte
15
layer of hippocampus
15
neutrophil
15
retinal pigment epithelial cell
15
skeletal muscle tissue
14
GM12878
14
T cell
14
T-helper 17 cell
14
T-helper 2 cell
14
endocrine pancreas
14
prostate gland
14
right atrium auricular region
14
tibial artery
13
CD4-positive, alpha-beta T cell
13
HepG2
13
Peyer's patch
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
keratinocyte
13
mammary gland epithelial cell
13
neurosphere
13
osteoblast
13
skeletal muscle myoblast
12
adipocyte
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mesenchymal stem cell
12
neuroblastoma cell
12
substantia nigra
11
EndoC_BH1
11
fibroblast of dermis
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
ascending aorta
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
frontal cortex
10
gastric cancer cell
10
lymphocyte
10
macrophage
10
mammary epithelial cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
omental fat pad
10
right renal cortex interstitium
10
temporal lobe
10
thoracic aorta
9
HEK293
9
SK-N-DZ
9
aorta
9
cerebellum
9
diffuse intrinsic pontine glioma
9
kidney tubule cell
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
putamen
9
tongue
9
trophoblast
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
IMR-90
8
NAMALWA cell
8
dermis blood vessel endothelial cell
8
endodermal cell
8
globus pallidus
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
subcutaneous adipose tissue
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
Ammon's horn
7
B-lymphoblastoid cell line
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
HT-29
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
eye
7
fibroblast cell line
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
skin fibroblast
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
HAP-1
6
HCT116
6
HL-60
6
HUES8
Organ
5
epithelium
Life stage
1
unknown
Date released
3
February, 2021
1
February, 2023
1
May, 2022
Software used
4
macs
1
rasqual
Lab
19
Bing Ren, UCSD
5
AMP-T2D consortium
3
Kyle Gaulton, UCSD
3
Stephen Parker, UMich
1
Katalin Susztak, Upenn
Project
5
AMP
RFA
5
AMP
annotation_category!
Gene expression levels
month_released!
July, 2020
March, 2020
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR296FOQ
released
Annotation file set
: Histone modifications annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR406JQN
released
Annotation file set
: Binding sites annotation for Cardiovascular Primary_endothelial_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR388QAH
released
Annotation file set
: Binding sites annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP