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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
83
heart
72
brain
67
muscle of arm
65
kidney
64
stomach
62
lung
60
placenta
58
muscle of leg
56
large intestine
55
small intestine
54
muscle of back
53
HeLa-S3
52
left lung
48
thymus
46
H1-hESC
45
right lung
44
neural progenitor cell
42
right kidney
40
renal cortex interstitium
40
renal pelvis
37
adrenal gland
36
left kidney
35
spinal cord
30
CD8-positive, alpha-beta T cell
30
fibroblast
29
endothelial cell
29
macrophage
27
monocyte
23
CD4-positive, alpha-beta memory T cell
23
trophoblast cell
22
K562
22
foreskin keratinocyte
22
liver
22
pericyte cell
22
smooth muscle cell
21
adipocyte
21
keratinocyte
20
breast cancer cell
19
B cell
19
CD14-positive monocyte
19
HFFc6
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart left ventricle
19
hepatocyte
17
cardiac muscle cell
17
embryonic stem cell
17
muscle of trunk
17
retina
16
H9
16
HepG2
16
chorionic villus
16
islet of Langerhans
16
retinal pigment epithelial cell
15
astrocyte
14
T-helper 17 cell
14
pancreatic ductal cell
13
T cell
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
heart right ventricle
13
mesenchymal stem cell
13
neurosphere
13
osteoblast
13
regulatory T cell
13
spleen
12
EndoC_BH1
12
common myeloid progenitor, CD34-positive
12
excitatory neuron
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
11
GM12878
11
epithelial cell of prostate
11
erythroblast
11
fibroblast of lung
11
left renal pelvis
11
right renal pelvis
11
skeletal muscle myoblast
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
neutrophil
10
pancreatic acinar cell
10
right renal cortex interstitium
10
skin fibroblast
10
trophoblast
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
mammary epithelial cell
9
mammary gland epithelial cell
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
NAMALWA cell
8
colon epithelial cell
8
endodermal cell
8
fibroblast cell line
8
fibroblast of dermis
8
limb
8
mesendoderm
8
ovary
8
pituitary stalk
8
testis
7
AG04449 cell
7
AG04450 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
CMK
7
Jurkat
7
MCF-7
7
MG63
7
PC-9
7
SK-N-MC
7
WERI-Rb-1
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
hematopoietic multipotent progenitor cell
7
natural killer cell
7
pancreas
7
pancreatic beta cell
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HUES6
6
HUES8
6
T-helper 2 cell
6
WI38
6
adipose tissue
6
chondrocyte
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
glomerular endothelial cell
6
hESC cell
6
iPSC derived cell line
6
mesodermal cell
6
neuroblastoma cell line
6
pancreatic delta cell
6
psoas muscle
6
skeletal muscle satellite cell
6
skeletal muscle tissue
5
A549
5
A673
5
CyT49
5
Ewing sarcoma
5
GM19240
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
KARPAS-422 cell
5
L1-S8
5
NT2-D1 cell
5
SGBS preadipocytes
5
T-helper 1 cell
5
acute myeloid leukemia
5
coronary artery
5
enterocyte
5
glomerular visceral epithelial cell
5
non-pigmented ciliary epithelial cell
5
osteosarcoma
5
pancreatic alpha cell
5
prostate cancer cell line
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
sigmoid colon
5
skeletal muscle cell
5
skeletal muscle fiber
5
skin of body
5
smooth muscle cell of the coronary artery
5
type I muscle cell
5
umbilical cord
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
COLO205
4
Caco-2 cell
4
DND-41
Organ
2
blood vessel
2
epithelium
2
liver
2
vasculature
Life stage
adult
2
fetal
Date released
2
November, 2021
Software used
2
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
annotation_category!
Gene expression levels
month_released!
March, 2023
relevant_life_stage!
adult
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR947VGN
released
Annotation file set
: Accessible chromatin annotation of Fetal Hepatic Endothelial 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR698JKQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Hepatic Endothelial 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE