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Schema
Citing CMDGA
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Annotation type
1
caQTL
1
candidate regulatory elements
Annotation Category
Gene expression levels
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
115
monocyte
47
CD8-positive, alpha-beta T cell
30
endothelial cell
29
fibroblast
26
macrophage
19
CD14-positive monocyte
19
pericyte cell
19
smooth muscle cell
17
hepatocyte
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
14
B cell
14
endothelial cell of umbilical vein
13
astrocyte
13
foreskin fibroblast
13
mammary epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
pancreatic ductal cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
osteoblast
12
regulatory T cell
11
erythroblast
11
keratinocyte
11
pancreatic beta cell
10
T cell
10
natural killer cell
10
pancreatic acinar cell
10
pancreatic alpha cell
9
mature neutrophil
9
neutrophil
9
skeletal muscle myoblast
8
glutamatergic neuron
8
pancreatic delta cell
8
skeletal muscle satellite cell
7
T-helper 1 cell
7
cardiac muscle cell
7
fibroblast of lung
7
foreskin keratinocyte
7
retinal pigment epithelial cell
7
skeletal muscle fiber
7
type II pneumocyte
6
T-cell
6
bronchial epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
memory B cell
6
mesenchymal stem cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
trophoblast cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
alternatively activated macrophage
5
basal cell
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
gabaergic neuron
5
hepatic stellate cell
5
inhibitory neuron
5
mast cell
5
myofibroblast cell
5
naive B cell
5
plasma cell
5
tracheal epithelial cell
4
CD1c-positive myeloid dendritic cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
choroid plexus epithelial cell
4
dermis blood vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of proximal tubule
4
glomerular endothelial cell
4
inflammatory macrophage
4
kidney glomerular epithelial cell
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
megakaryocyte
4
mesothelial cell
4
neurosphere
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
pulmonary artery endothelial cell
4
renal cortical epithelial cell
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Ishikawa
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
adipocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
blood cell
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
erythroid cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
foreskin melanocyte
3
glomerular visceral epithelial cell
3
goblet cell
3
kidney epithelial cell
3
kidney tubule cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
skeletal muscle cell
3
skin fibroblast
3
smooth muscle cell of the brain vasculature
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th2 cell
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fat cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of peridontal ligament
2
fibroblast of the aortic adventitia
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
iris pigment epithelial cell
2
kidney capillary endothelial cell
2
leukemic stem cell
2
leukocyte
2
lung microvascular endothelial cell
2
luteal cell
2
mantle cell lymphoma cell
2
mature NK T cell
2
mature natural killer cell
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
2
mononuclear cell
Organ
2
blood vessel
2
connective tissue
2
vasculature
Life stage
1
unknown
Date released
September, 2022
1
February, 2021
1
February, 2023
Software used
1
encode-ccres
1
rasqual
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_category!
Gene expression levels
month_released!
September, 2022
Showing 2 of 2 results
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Download
FileSet
DSR077AGV
released
Annotation file set
: Chromatin accessibility QTLs in fibroblasts passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761GFE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of the aortic adventitia
Lab:
AMP-T2D consortium
Project:
AMP