Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
Gene expression levels
2
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bam
1
bed gappedPeak
1
bigWig
1
xls
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
113
monocyte
87
heart
83
stomach
72
brain
67
lung
67
muscle of arm
66
kidney
63
HeLa-S3
62
small intestine
61
A549
59
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
47
thymus
45
right lung
44
H1-hESC
44
neural progenitor cell
43
liver
42
CD8-positive, alpha-beta T cell
42
hematopoietic multipotent progenitor cell
42
right kidney
40
renal cortex interstitium
40
renal pelvis
39
K562
39
retina
37
B cell
36
left kidney
34
spinal cord
33
heart left ventricle
32
CD4-positive, alpha-beta memory T cell
31
spleen
30
islet of Langerhans
28
adipose tissue
25
MCF-7
23
tibial nerve
22
CD8-positive, alpha-beta memory T cell
22
foreskin keratinocyte
22
sigmoid colon
21
body of pancreas
21
pancreas
20
breast cancer cell
20
caudate nucleus
20
mononuclear cell
20
pigmented layer of retina
20
trophoblast cell
19
psoas muscle
19
regulatory T cell
18
HFFc6
18
coronary artery
18
foreskin fibroblast
18
heart right ventricle
18
ovary
17
endothelial cell of umbilical vein
17
gastrocnemius medialis
17
right atrium auricular region
17
thyroid gland
17
tibial artery
17
transverse colon
16
CD14-positive monocyte
16
chorionic villus
16
embryonic stem cell
16
muscle of trunk
16
natural killer cell
16
testis
16
upper lobe of left lung
15
H9
15
HepG2
15
T-helper 1 cell
15
cardiac muscle cell
15
hepatocyte
15
layer of hippocampus
15
neutrophil
15
omental fat pad
15
retinal pigment epithelial cell
15
skeletal muscle tissue
15
substantia nigra
14
GM12878
14
T cell
14
T-helper 17 cell
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
mesenchymal stem cell
14
prostate gland
14
putamen
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
bronchial epithelial cell
13
cerebellum
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
keratinocyte
13
mammary gland epithelial cell
13
neurosphere
13
osteoblast
13
skeletal muscle myoblast
12
EndoC_BH1
12
adipocyte
12
aorta
12
frontal cortex
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
12
subcutaneous adipose tissue
11
Ammon's horn
11
fibroblast of dermis
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
lymphocyte
10
macrophage
10
mammary epithelial cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
right renal cortex interstitium
10
temporal lobe
10
thoracic aorta
10
trophoblast
9
HEK293
9
SK-N-DZ
9
diffuse intrinsic pontine glioma
esophagus
9
kidney tubule cell
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
IMR-90
8
NAMALWA cell
8
dermis blood vessel endothelial cell
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19239
7
GM19240
7
HT-29
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
mesendoderm
7
right lobe of liver
7
skin fibroblast
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
GM19238
6
GM23248
6
HAP-1
6
HCT116
Organ
2
epithelium
2
pancreas
Life stage
1
adult
1
unknown
Date released
1
October, 2019
1
September, 2022
Software used
2
macs
Lab
7
Kyle Gaulton, UCSD
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
annotation_category!
Gene expression levels
biosample_term_name!
esophagus
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR938VDA
released
Annotation file set
: Accessible chromatin from snATAC-seq of alpha cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR110ITH
released
Annotation file set
: Pancreatic alpha cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP