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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
Annotation Category
Gene expression levels
3
Target gene links
1
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
10
bed bed3+
bigWig
3
bigBed narrowPeak
1
bam
1
bed gappedPeak
1
xls
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
29
islet of Langerhans
22
body of pancreas
19
pancreas
15
endocrine pancreas
8
pancreatic ductal cell
4
pancreatic acinar cell
4
pancreatic delta cell
3
pancreatic A cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
type B pancreatic cell
2
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
Organ
4
epithelium
4
pancreas
Life stage
1
unknown
Date released
2
January, 2021
1
November, 2021
1
September, 2022
Software used
2
cicero
1
abc
1
macs
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
T1D
1
AMP
1
ENCODE
RFA
2
T1D
1
AMP
1
ENCODE3
annotation_category!
Gene expression levels
biosample_type!
cell line
files.file_type!
bigWig
Showing 4 of 4 results
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Download
FileSet
DSR025RWZ
released
Annotation file set
: Accessible chromatin from snATAC-seq of delta cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR803ULZ
released
Annotation file set
: Target gene predictions of Pancreatic Delta,Gamma cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR078DAN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR092ALL
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D