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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
eQTL
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
bed bed9
1
tsv
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
86
heart
85
stomach
74
kidney
72
brain
67
muscle of arm
66
lung
62
small intestine
60
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
muscle of back
52
left lung
47
thymus
45
liver
45
right lung
42
right kidney
40
renal cortex interstitium
40
renal pelvis
39
retina
36
left kidney
32
islet of Langerhans
32
spleen
31
heart left ventricle
31
spinal cord
28
adipose tissue
22
sigmoid colon
20
pancreas
20
pigmented layer of retina
20
tibial nerve
19
body of pancreas
19
ovary
19
thyroid gland
19
transverse colon
18
caudate nucleus
18
gastrocnemius medialis
17
coronary artery
17
muscle of trunk
17
psoas muscle
17
testis
16
chorionic villus
16
heart right ventricle
16
layer of hippocampus
16
upper lobe of left lung
15
endocrine pancreas
15
skeletal muscle tissue
15
tibial artery
14
Peyer's patch
14
prostate gland
14
right atrium auricular region
14
substantia nigra
13
omental fat pad
13
temporal lobe
12
ascending aorta
12
left renal cortex interstitium
12
left renal pelvis
12
right renal pelvis
12
subcutaneous adipose tissue
11
breast epithelium
11
cerebellum
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
frontal cortex
11
left cardiac atrium
11
putamen
11
right renal cortex interstitium
11
thoracic aorta
10
angular gyrus
10
aorta
10
chorion membrane
10
colonic mucosa
10
lower leg skin
10
trophoblast
9
cingulate gyrus
9
duodenal mucosa
9
esophagus
9
eye
9
mucosa of rectum
9
parathyroid adenoma
9
stomach smooth muscle
9
tongue
9
vagina
8
globus pallidus
8
limb
8
midbrain
8
muscle layer of colon
8
muscle layer of duodenum
8
urinary bladder
8
uterus
7
Ammon's horn
7
gastroesophageal sphincter
7
occipital lobe
7
superior temporal gyrus
6
Brodmann (1909) area 46
6
medulla oblongata
6
middle frontal gyrus
6
pons
6
right cardiac atrium
6
skin of body
6
subcutaneous abdominal adipose tissue
6
umbilical cord
5
cartilage tissue
5
cerebellar cortex
5
germinal matrix
5
right lobe of liver
4
amnion
4
cortex of kidney
4
embryonic facial prominence
4
femur
4
inferior parietal cortex
4
mucosa of stomach
4
rectum smooth muscle tissue
3
amygdala
3
arm bone
3
germinal center
3
hypothalamus
3
leg bone
3
nucleus accumbens
3
prefrontal cortex
3
suprapubic skin
2
hindlimb muscle
2
muscle of leg
2
anterior cingulate cortex
2
blood
2
breast carcinoma
2
cerebellum (Hemisphere)
2
chorion
2
endometrium cancer
2
first pancreatic bud
2
forelimb muscle
2
kidney epithelium
2
mammary gland
2
middle frontal area 46
2
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
2
placental basal plate
2
respiratory system smooth muscle
2
skin of forearm
2
skin of prepuce of penis
2
tissue
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
C1 segment of cervical spinal cord
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
breast
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
circle of Willis
1
claustrum of brain
1
colon
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dorsolateral prefrontal cortex
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus mucosa
1
fallopian tube
1
fetal heart
1
frontal pole
1
gastrocnemius medialis(Muscle - Skeletal)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
left leg bone
1
left ventricle myocardium
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
mid-frontal lobe
1
minor salivary gland
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
Organ
5
liver
Life stage
5
adult
Date released
March, 2020
3
September, 2022
1
February, 2020
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
1
gtex_eqtl:V8
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_category!
Gene expression levels
month_released!
March, 2020
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR656SPH
released
Annotation file set
: Candidate regulatory elements for BSS01519 right lobe of liver from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR041IUM
released
Annotation file set
: Target gene predictions for BSS01519 right lobe of liver from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR449UIO
released
Annotation file set
: Chromatin states for BSS01519 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR839LHJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE right lobe of liver
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR064MGQ
released
Annotation file set
: eQTL of right lobe of liver for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP