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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
variant allelic effects
1
target gene predictions
Annotation Category
5
cis-regulatory elements
Gene expression levels
2
Genetic variant effects
1
Target gene links
Annotation type Category
7
snATAC-seq
1
Capture-C
Available data
8
bed bed3+
3
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
stem cell
Biosample term
116
monocyte
87
heart
85
stomach
74
kidney
72
brain
67
lung
64
HeLa-S3
63
small intestine
62
A549
61
adrenal gland
60
placenta
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
CD8-positive, alpha-beta T cell
48
thymus
47
B cell
47
liver
46
H1-hESC
45
right lung
44
neural progenitor cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
39
retina
37
fibroblast
36
endothelial cell
36
left kidney
35
macrophage
35
spinal cord
34
islet of Langerhans
33
heart left ventricle
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
29
adipose tissue
28
adipocyte
26
MCF-7
26
hepatocyte
26
natural killer cell
25
pericyte cell
25
smooth muscle cell
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
body of pancreas
22
foreskin keratinocyte
22
pancreas
21
caudate nucleus
21
keratinocyte
21
regulatory T cell
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
19
coronary artery
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
ovary
18
HFFc6
18
heart right ventricle
18
mesenchymal stem cell
18
thyroid gland
18
transverse colon
17
HepG2
17
cardiac muscle cell
17
embryonic stem cell
17
muscle of trunk
17
right atrium auricular region
16
GM12878
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
layer of hippocampus
16
retinal pigment epithelial cell
16
substantia nigra
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
T-helper 1 cell
15
astrocyte
15
mammary gland epithelial cell
15
neutrophil
15
omental fat pad
15
pancreatic ductal cell
15
skeletal muscle myoblast
15
skeletal muscle tissue
15
subcutaneous adipose tissue
14
H9
14
T-helper 17 cell
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
osteoblast
14
prostate gland
14
putamen
13
Peyer's patch
13
bronchial epithelial cell
13
cerebellum
13
neuronal stem cell
13
neurosphere
12
EndoC_BH1
12
aorta
12
excitatory neuron
12
fibroblast of dermis
12
frontal cortex
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic beta cell
11
Ammon's horn
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
epithelial cell of prostate
11
erythroblast
11
hepatic stellate cell
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic acinar cell
11
right renal pelvis
11
skeletal muscle satellite cell
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
mast cell
10
pancreatic alpha cell
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of lymphatic vessel
9
esophagus
9
kidney tubule cell
9
liposarcoma
9
pancreatic delta cell
9
parathyroid adenoma
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
Organ
7
musculature of body
1
brain
Date released
4
February, 2024
3
November, 2021
1
September, 2023
Software used
5
macs
2
deltasvm
1
chicago
Lab
5
Bing Ren, UCSD
2
Stephen Parker, UMich
1
Struan F.A. Grant, CHOP
Project
5
AMP
3
ENCODE
RFA
3
AMP2
3
ENCODE3
2
AMP
annotation_category!
Gene expression levels
organ_slims!
limb
trachea
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR584RYA
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR222MBS
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR958BVX
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR776HHT
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR640ZDY
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP