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Citing CMDGA
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Annotation type
1
caQTL
1
target gene predictions
Annotation Category
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
3
cell line
2
primary cell
Biosample term
113
monocyte
54
common myeloid progenitor, CD34-positive
47
CD8-positive, alpha-beta T cell
41
B cell
33
endothelial cell
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
31
CD14-positive monocyte
29
macrophage
24
pericyte cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
natural killer cell
21
smooth muscle cell
20
hepatocyte
20
mononuclear cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
19
regulatory T cell
17
keratinocyte
17
trophoblast cell
16
astrocyte
16
fibroblast of lung
15
CD4-positive, alpha-beta T cell
15
T-helper 1 cell
15
foreskin fibroblast
15
neutrophil
14
T-helper 17 cell
14
T-helper 2 cell
14
skeletal muscle myoblast
13
mammary gland epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
osteoblast
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
mammary epithelial cell
12
pancreatic beta cell
12
pancreatic ductal cell
11
bronchial epithelial cell
11
erythroblast
11
pancreatic alpha cell
11
skeletal muscle satellite cell
10
dermis blood vessel endothelial cell
10
pancreatic acinar cell
10
pancreatic delta cell
9
epithelial cell of prostate
9
mature neutrophil
9
naive T cell
9
retinal pigment epithelial cell
8
fibroblast of breast
8
glutamatergic neuron
8
hepatic stellate cell
8
kidney tubule cell
8
mast cell
8
myoepithelial cell of mammary gland
8
skin fibroblast
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
endothelial cell of lymphatic vessel
7
epithelial cell of proximal tubule
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
luminal epithelial cell of mammary gland
7
skeletal muscle fiber
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
glomerular endothelial cell
6
kidney epithelial cell
6
kidney glomerular epithelial cell
6
memory B cell
6
mesenchymal stem cell
6
myofibroblast cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
adipocyte
5
alternatively activated macrophage
5
basal cell
5
brain microvascular endothelial cell
5
endocardial cell
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
glomerular visceral epithelial cell
5
inhibitory neuron
5
kidney capillary endothelial cell
5
lung microvascular endothelial cell
5
naive B cell
5
plasma cell
4
activated CD4-positive, alpha-beta T cell
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
iris pigment epithelial cell
4
megakaryocyte
4
mesothelial cell
4
neuronal stem cell
4
non-pigmented ciliary epithelial cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
tracheal epithelial cell
4
type I pneumocyte
3
T follicular helper cell
3
activated CD8-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic adventitial fibroblast
3
blood cell
3
brain pericyte
3
ciliated cell
3
club cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
goblet cell
3
mammary stem cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
regular cardiac myocyte
3
renal epithelial cell
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Ishikawa
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th1 cell
2
Th17 cell
2
acute myeloid leukemia cell
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
cholangiocyte
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
erythrocyte
2
erythroid cell
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fat cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
Organ
2
artery
2
blood vessel
2
heart
2
vasculature
Date released
1
February, 2023
1
May, 2021
Software used
1
abc
1
rasqual
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
RFA
2
AMP
annotation_category!
Gene expression levels
month_released!
June, 2020
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP