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Citing CMDGA
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Annotation type
1
accessible chromatin
1
gene expression
1
target gene predictions
Annotation Category
1
Gene expression levels
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
ChIP-seq
65
DNase-seq
1
RNA-seq
1
pCHi-C
Available data
2
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
2
tissue
1
in vitro differentiated cells
Biosample term
52
HeLa-S3
47
H1-hESC
36
monocyte
33
endothelial cell
24
retina
23
hepatocyte
20
EndoC_BH1
20
fibroblast
20
pancreatic ductal cell
20
pigmented layer of retina
19
HFFc6
19
islet of Langerhans
19
macrophage
19
pericyte cell
18
K562
18
neural progenitor cell
17
epithelial cell of proximal tubule
17
induced pluripotent stem cell
17
kidney
17
pancreatic beta cell
17
smooth muscle cell
16
glomerular endothelial cell
16
pancreatic acinar cell
16
pancreatic alpha cell
15
CD14-positive monocyte
15
pancreatic delta cell
14
excitatory neuron
13
CD8-positive, alpha-beta T cell
13
regulatory T cell
12
B cell
12
adipocyte
12
astrocyte
11
cardiomyocytes
10
T-helper 1 cell
10
endothelial cell of hepatic sinusoid
10
pancreatic stellate cell
10
pituitary stalk
9
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
heart
9
liver
9
memory B cell
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
8
GM12878
8
embryonic stem cell
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
natural killer cell
8
osteoblast
8
pancreas
8
skeletal muscle satellite cell
8
subcutaneous adipose tissue
7
H9
7
T cell
7
adipose tissue
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
erythroblast
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
skeletal muscle fiber
6
SGBS preadipocytes
6
colon epithelial cell
6
gamma-delta T cell
6
heart left ventricle
6
lymphocyte
6
mesenchymal stem cell
6
naive B cell
6
olfactory receptor cell
6
stomach
6
type II pneumocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T-helper 2 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adrenal gland
5
cardiac precursors (cardiac muscle cell)
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
coronary artery
5
cortical cell of adrenal gland
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
inhibitory neuron
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
psoas muscle
right atrium auricular region
5
spleen
5
tibial nerve
5
type I muscle cell
5
type II muscle cell
4
Ammon's horn
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
T follicular helper cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
bone tissue
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
frontal cortex
4
heart right ventricle
4
hepatic stellate cell
4
iPSC derived cell line
4
kidney connecting tubule epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
nephron progenitor
4
omental fat pad
4
ovary
4
pancreatic A cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
skeletal muscle myoblast
4
skin fibroblast
4
smooth muscle cell of the coronary artery
4
smooth muscle cell of the esophagus
4
thymus
4
tibial artery
4
type B pancreatic cell
4
type I pneumocyte
3
cardiac fibroblast
3
Cycling Mononuclear Phagocyte
Organ
2
lung
1
epithelium
1
penis
1
skin of body
Life stage
1
adult
Date released
1
June, 2020
1
March, 2020
1
March, 2024
Software used
1
macs
1
nospecificsoft_customcode
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_category!
Genetic variant effects
annotation_type_category!
ChIP-seq
biosample_term_name!
right atrium auricular region
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR315SRJ
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Lung.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR480PWE
released
Annotation file set
: Accessible chromatin annotation for Epidermis Keratinocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR063XFX
released
Annotation file set
: A target gene prediction annotation in Human Lung of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP