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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
6
ChIP-seq
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
120
monocyte
55
HeLa-S3
50
H1-hESC
42
neural progenitor cell
41
CD8-positive, alpha-beta T cell
39
endothelial cell
33
kidney
28
heart
28
hepatocyte
27
retina
26
K562
26
fibroblast
24
islet of Langerhans
23
brain
22
B cell
22
EndoC_BH1
22
macrophage
22
pancreatic ductal cell
22
pericyte cell
21
A549
21
stomach
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
smooth muscle cell
18
embryonic stem cell
18
epithelial cell of proximal tubule
18
liver
18
lung
17
pancreatic beta cell
17
placenta
16
adipocyte
16
endothelial cell of hepatic sinusoid
16
pancreatic alpha cell
16
regulatory T cell
16
small intestine
15
adrenal gland
15
glomerular endothelial cell
15
induced pluripotent stem cell
15
muscle of arm
15
muscle of leg
15
pancreatic acinar cell
14
pancreatic delta cell
14
thymus
13
astrocyte
13
excitatory neuron
13
keratinocyte
13
large intestine
13
muscle of back
13
natural killer cell
12
HepG2
12
common myeloid progenitor, CD34-positive
12
heart left ventricle
12
hematopoietic multipotent progenitor cell
12
left lung
12
neuroblastoma cell
11
GM12878
11
T cell
11
T-helper 17 cell
11
adipose tissue
10
T-helper 1 cell
10
gastric cancer cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right lung
10
skeletal muscle satellite cell
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
Rhabdomyosarcoma
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
erythroblast
9
liposarcoma
9
osteoblast
9
retinal pigment epithelial cell
9
spinal cord
8
B-lymphoblastoid cell line
8
fibroblast cell line
8
renal pelvis
8
right kidney
8
spleen
8
subcutaneous adipose tissue
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
H9
7
aorta
7
endothelial cell of umbilical vein
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of cardiac tissue
7
glomerular visceral epithelial cell
7
left kidney
7
lymphocyte
7
mast cell
7
mature neutrophil
7
memory B cell
7
mesenchymal stem cell
7
temporal lobe
6
Chondroid Chordoma
6
cardiac muscle cell
6
cardiomyocytes (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
coronary artery
6
hESC cell
6
left cardiac atrium
6
mammary gland epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neuronal stem cell
6
pancreas
6
plasma cell
6
renal cortex interstitium
6
skeletal muscle fiber
6
skeletal muscle myoblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM19238
5
GM19239
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
T-helper 2 cell
5
cardiac precursors (cardiac muscle cell)
5
endothelial cell of lymphatic vessel
5
foreskin fibroblast
5
glutamatergic neuron
5
heart right ventricle
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary epithelial cell
5
mesangial cell
5
omental fat pad
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
psoas muscle
5
testis
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD14-positive monocyte
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM12875
4
GM12891
4
GM12892
4
GM18505
Life stage
1
newborn
Date released
2
February, 2021
1
October, 2022
1
September, 2022
Software used
2
chromhmm
2
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_category!
Genetic variant effects
annotation_type_category!
DNase-seq
biosample_term_name!
WERI-Rb-1
Showing 4 of 4 results
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Download
FileSet
DSR686XLF
released
Annotation file set
: Binding sites annotation for BJ cell (BJ) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR096DKH
released
Annotation file set
: Chromatin states for BSS00113 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR136ILX
released
Annotation file set
: Histone modifications annotation for Epidermis BJ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR133NEG
released
Annotation file set
: Binding sites annotation for Epidermis BJ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP