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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Genetic variant effects
1
Target gene links
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
2
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
58
hg19
4
GRCh38
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
97
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
25
kidney
24
heart
22
K562
20
fibroblast
19
HFFc6
brain
19
pericyte cell
19
stomach
18
A549
18
endothelial cell
18
hepatocyte
17
muscle of arm
16
endothelial cell of hepatic sinusoid
16
lung
16
muscle of leg
15
small intestine
14
adrenal gland
14
placenta
14
smooth muscle cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
11
B cell
11
astrocyte
11
heart left ventricle
11
macrophage
11
right kidney
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
T cell
9
left kidney
9
liver
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
colon epithelial cell
7
left cardiac atrium
7
lymphocyte
7
spinal cord
7
spleen
6
HepG2
6
adipose tissue
6
coronary artery
6
fibroblast of cardiac tissue
6
heart right ventricle
6
keratinocyte
6
mononuclear cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic ductal cell
6
skeletal muscle satellite cell
6
tibial nerve
5
MCF-7
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
erythroblast
5
inhibitory neuron
5
islet of Langerhans
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
pancreas
5
sigmoid colon
5
tibial artery
5
trophoblast cell
5
type II pneumocyte
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
angular gyrus
4
aorta
4
ascending aorta
4
blood vessel smooth muscle cell
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
gastrocnemius medialis
4
glutamatergic neuron
4
iPSC derived cell line
4
muscle of trunk
4
omental fat pad
4
osteoblast
4
ovary
4
pancreatic beta cell
4
psoas muscle
4
retina
4
right atrium auricular region
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
temporal lobe
4
thoracic aorta
4
thyroid gland
4
transverse colon
3
cardiac fibroblast
3
HCT116
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
adipocyte
3
cardiac muscle cell
3
cerebellum
3
chorion membrane
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
frontal cortex
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
mesenchymal stem cell
3
mesothelial cell
3
naive T cell
3
natural killer cell
3
neurosphere
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
regulatory T cell
3
retinal pigment epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
testis
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac endothelial cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colon goblet cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
eccrine cell
2
endodermal cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fetal cardiomyocyte
2
fibroblast of breast
2
foreskin fibroblast
2
foveolar cell of stomach
2
germinal matrix
Organ
2
esophagus
2
musculature of body
Life stage
2
adult
Date released
2
November, 2021
2
September, 2022
Software used
2
chromhmm
1
abc
1
macs
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
annotation_category!
Genetic variant effects
biosample_term_name!
brain
Showing 4 of 4 results
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Download
FileSet
DSR139POU
released
Annotation file set
: Chromatin states for BSS00322 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR233DGH
released
Annotation file set
: Chromatin states for BSS00321 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE