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Citing CMDGA
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Annotation type
1
gene expression
1
target gene predictions
Annotation Category
1
Gene expression levels
Genetic variant effects
1
Target gene links
Annotation type Category
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
1
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
4
cell line
2
primary cell
Biosample term
122
monocyte
54
common myeloid progenitor, CD34-positive
50
CD8-positive, alpha-beta T cell
43
B cell
37
endothelial cell
32
CD4-positive, alpha-beta memory T cell
32
hepatocyte
31
CD14-positive monocyte
26
regulatory T cell
24
fibroblast
24
pericyte cell
23
natural killer cell
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
epithelial cell of proximal tubule
20
T-helper 17 cell
20
glomerular endothelial cell
20
macrophage
20
mononuclear cell
19
endothelial cell of umbilical vein
18
T cell
18
pancreatic ductal cell
18
smooth muscle cell
18
trophoblast cell
17
astrocyte
17
osteoblast
17
pancreatic beta cell
16
T-helper 2 cell
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
pancreatic alpha cell
15
CD4-positive, alpha-beta T cell
15
pancreatic acinar cell
15
pancreatic delta cell
15
skeletal muscle myoblast
13
mammary epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
mammary gland epithelial cell
11
erythroblast
11
glomerular visceral epithelial cell
10
kidney tubule cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
hepatic stellate cell
9
mature neutrophil
9
memory B cell
9
naive T cell
9
neutrophil
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
mast cell
8
myoepithelial cell of mammary gland
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
pancreatic stellate cell
7
CD1c-positive myeloid dendritic cell
7
endothelial cell of lymphatic vessel
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
mesangial cell
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
skeletal muscle fiber
6
T-cell
6
alternatively activated macrophage
6
choroid plexus epithelial cell
6
colon epithelial cell
6
foreskin melanocyte
6
gamma-delta T cell
6
kidney epithelial cell
6
naive B cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
plasma cell
6
type II pneumocyte
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adipocyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
brain microvascular endothelial cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
cortical cell of adrenal gland
5
effector memory CD8-positive, alpha-beta T cell
5
endocardial cell
5
fibroblast of peridontal ligament
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
mesenchymal stem cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
T follicular helper cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
epithelial cell of esophagus
4
fibroblast of gingiva
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
neuronal stem cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
Organ
2
artery
2
blood vessel
2
heart
2
vasculature
Life stage
1
adult
Date released
1
February, 2020
1
May, 2021
Software used
1
abc
1
r
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
RFA
2
AMP
annotation_category!
Genetic variant effects
biosample_term_name!
Adaptive / Maladaptive / Repairing Fibroblast
organ_slims!
skin of body
Showing 2 of 2 results
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Download
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR277QFW
released
Annotation file set
: Gene expression levels of Coronary artery smooth muscle cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP