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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
Target gene links
Annotation type Category
5
ChIP-seq
2
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
106
monocyte
65
heart
61
stomach
56
kidney
53
brain
50
lung
50
muscle of arm
44
small intestine
43
adrenal gland
43
placenta
42
A549
42
muscle of leg
41
CD8-positive, alpha-beta T cell
41
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
36
neural progenitor cell
33
right lung
33
thymus
32
hematopoietic multipotent progenitor cell
31
right kidney
30
renal cortex interstitium
29
renal pelvis
28
liver
27
left kidney
26
B cell
25
hepatocyte
24
islet of Langerhans
24
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
heart left ventricle
23
spleen
21
epithelial cell of proximal tubule
20
breast cancer cell
18
MCF-7
18
body of pancreas
18
glomerular endothelial cell
17
K562
17
endothelial cell
17
foreskin keratinocyte
17
regulatory T cell
17
tibial nerve
16
adipose tissue
15
CD8-positive, alpha-beta memory T cell
15
T-helper 1 cell
15
T-helper 17 cell
15
caudate nucleus
15
induced pluripotent stem cell
15
sigmoid colon
14
EndoC_BH1
14
H1-hESC
14
foreskin fibroblast
14
keratinocyte
14
pancreatic ductal cell
14
trophoblast cell
13
adipocyte
13
coronary artery
13
endothelial cell of umbilical vein
13
mononuclear cell
13
retina
12
CD14-positive monocyte
12
cardiac muscle cell
12
heart right ventricle
12
natural killer cell
12
neuroblastoma cell
12
omental fat pad
12
right atrium auricular region
12
skeletal muscle myoblast
12
subcutaneous adipose tissue
12
temporal lobe
12
testis
12
tibial artery
12
upper lobe of left lung
11
CD4-positive, alpha-beta T cell
11
HepG2
11
T-helper 2 cell
11
cerebellum
11
fibroblast of lung
11
gastrocnemius medialis
11
ovary
11
skeletal muscle tissue
11
substantia nigra
11
thyroid gland
10
T cell
10
ascending aorta
10
bronchial epithelial cell
10
chorionic villus
10
gastric cancer cell
10
layer of hippocampus
10
mammary epithelial cell
10
mammary gland epithelial cell
10
mesenchymal stem cell
10
muscle of trunk
10
progenitor cell of endocrine pancreas
10
psoas muscle
9
HeLa-S3
9
Rhabdomyosarcoma
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
embryonic stem cell
9
endocrine pancreas
9
frontal cortex
9
left cardiac atrium
9
liposarcoma
9
neurosphere
9
osteoblast
9
pancreas
9
transverse colon
8
22Rv1
8
Peyer's patch
8
aorta
8
endothelial cell of hepatic sinusoid
8
fibroblast
8
fibroblast of dermis
8
neuronal stem cell
8
neutrophil
8
prostate gland
8
right renal pelvis
7
Ammon's horn
7
B-lymphoblastoid cell line
7
GM12878
7
H9
7
HEK293
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
fibroblast of cardiac tissue
7
left renal cortex interstitium
7
left renal pelvis
7
macrophage
7
mature neutrophil
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
pancreatic acinar cell
7
putamen
7
right renal cortex interstitium
7
smooth muscle cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM12875
6
IMR-90
6
SK-N-DZ
6
angular gyrus
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
epithelial cell of prostate
6
foreskin melanocyte
6
glomerular visceral epithelial cell
6
hESC cell
6
hepatic stellate cell
6
lower leg skin
6
mesodermal cell
6
neuroblastoma cell line
6
pancreatic beta cell
6
right lobe of liver
6
thoracic aorta
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
Software used
2
macs
1
chromhmm
1
encode-ccres
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_category!
Target gene links
annotation_type!
accessible chromatin
eQTL
organ_slims!
breast
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP