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Schema
Citing CMDGA
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Annotation type
1
chromatin state
Annotation Category
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
cell line
Biosample term
10
endothelial cell of hepatic sinusoid
8
endothelial cell
8
kidney
7
induced pluripotent stem cell
6
adipocyte
6
fibroblast
6
hepatocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
left cardiac atrium
5
pancreatic acinar cell
5
pancreatic alpha cell
5
pancreatic beta cell
5
pancreatic delta cell
5
pancreatic ductal cell
5
smooth muscle cell
4
cartilage tissue
4
macrophage
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic stellate cell
4
skeletal muscle fiber
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
enterocyte
3
islet of Langerhans
3
mesenchymal stem cell
3
myofibroblast cell
3
pancreatic quiescent stellate cell
3
subcutaneous adipose tissue
3
type I muscle cell
3
type II muscle cell
2
CD4-positive helper T cell
2
ESC derived cell line
2
EndoC_BH1
2
Schwann cell
2
T cell
2
articular chondrocyte
2
basal cell
2
epithelial cell of esophagus
2
goblet cell
2
keratinocyte
2
liver
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-2 B cell
1
CD34-PB
1
CD8-positive, alpha-beta T cell
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
Pancreatic islets
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
alternatively activated macrophage
1
bronchial goblet cell
1
cardiac muscle cell
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
cortical cell of adrenal gland
1
dendritic cell
1
duodenal mucosa
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
fibroblast of lung
1
glial cell
1
glomerular endothelial cell
1
granulosa cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
layer of hippocampus
1
leukocyte
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary epithelial cell
1
mammary gland epithelial cell
1
mast cell
1
mesothelial cell
1
mid-frontal lobe
1
mucosa of rectum
1
natural killer cell
1
neural cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
purified protein and synthetic DNA oligo binding assay
1
rectum smooth muscle tissue
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal principal cell
1
skeletal muscle
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
stomach smooth muscle
1
substantia nigra
1
synovial joint
1
temporal lobe
1
thyroid follicular cell
1
type II pneumocyte
Organ
1
blood
1
bodily fluid
Date released
1
August, 2017
Software used
1
chromhmm
Lab
AMP-T2D consortium
1
Stephen Parker, UMich
Project
1
AMP
RFA
1
AMP
annotation_category!
Target gene links
annotation_type!
accessible chromatin
lab.title!
AMP-T2D consortium
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Download
FileSet
TSTSR418295
released
Annotation file set
: ChromHMM 13-state model for for human K562
Lab:
Stephen Parker, UMich
Project:
AMP