Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
Target gene links
5
cis-regulatory elements
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
cell line
1
stem cell
Biosample term
127
monocyte
68
heart
65
stomach
58
kidney
56
brain
51
lung
51
muscle of arm
46
small intestine
45
CD8-positive, alpha-beta T cell
45
adrenal gland
44
muscle of leg
44
placenta
42
large intestine
41
A549
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
36
retina
34
B cell
34
islet of Langerhans
34
right lung
33
thymus
32
hematopoietic multipotent progenitor cell
32
liver
32
right kidney
31
renal cortex interstitium
31
renal pelvis
29
hepatocyte
28
endothelial cell
27
heart left ventricle
27
left kidney
26
macrophage
25
fibroblast
25
spinal cord
24
spleen
23
CD4-positive, alpha-beta memory T cell
23
regulatory T cell
22
tibial nerve
21
EndoC_BH1
20
adipose tissue
20
epithelial cell of proximal tubule
20
pancreatic ductal cell
20
pigmented layer of retina
19
T-helper 1 cell
19
adipocyte
19
body of pancreas
19
caudate nucleus
19
glomerular endothelial cell
18
T cell
18
subcutaneous adipose tissue
17
T-helper 17 cell
17
coronary artery
17
foreskin keratinocyte
17
right atrium auricular region
17
smooth muscle cell
16
K562
16
MCF-7
16
natural killer cell
16
sigmoid colon
16
substantia nigra
16
tibial artery
15
CD8-positive, alpha-beta memory T cell
15
induced pluripotent stem cell
15
pancreas
15
pancreatic beta cell
15
trophoblast cell
14
endothelial cell of umbilical vein
14
frontal cortex
14
omental fat pad
14
pancreatic acinar cell
13
T-helper 2 cell
13
cerebellum
13
embryonic stem cell
13
excitatory neuron
13
gastrocnemius medialis
13
heart right ventricle
13
ovary
13
pancreatic alpha cell
13
putamen
13
testis
13
thyroid gland
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
ascending aorta
12
astrocyte
12
cardiac muscle cell
12
mesenchymal stem cell
12
mononuclear cell
12
pericyte cell
12
psoas muscle
12
retinal pigment epithelial cell
12
skeletal muscle tissue
12
temporal lobe
12
transverse colon
11
HepG2
11
breast cancer cell
11
foreskin fibroblast
11
keratinocyte
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
osteoblast
11
skeletal muscle myoblast
11
skeletal muscle satellite cell
11
upper lobe of left lung
10
Ammon's horn
10
chorionic villus
10
fibroblast of cardiac tissue
10
layer of hippocampus
10
lymphoblastoid cell line
10
muscle of trunk
10
neural progenitor cell
10
pancreatic delta cell
10
prostate gland
9
Peyer's patch
9
cardiomyocytes
9
endocrine pancreas
9
endothelial cell of hepatic sinusoid
9
esophagus muscularis mucosa
9
glomerular visceral epithelial cell
9
left cardiac atrium
9
left renal cortex interstitium
9
left renal pelvis
9
mammary gland epithelial cell
9
neurosphere
9
progenitor cell of endocrine pancreas
8
H9
8
HeLa-S3
8
Rhabdomyosarcoma
8
SK-N-DZ
8
bronchial epithelial cell
8
esophagus squamous epithelium
8
fibroblast of lung
8
gastric cancer cell
8
kidney tubule cell
8
pancreatic stellate cell
8
right renal pelvis
8
skeletal muscle fiber
7
22Rv1
7
amygdala
7
aorta
7
breast epithelium
7
colonic mucosa
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
hepatic stellate cell
7
mammary epithelial cell
7
neuroblastoma cell
7
right lobe of liver
7
right renal cortex interstitium
7
thoracic aorta
7
tongue
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
GM12878
6
HEK293
6
angular gyrus
6
anterior cingulate cortex
6
choroid plexus epithelial cell
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
diffuse intrinsic pontine glioma
6
duodenal mucosa
6
erythroblast
6
esophagus
6
fibroblast of dermis
6
globus pallidus
6
hypothalamus
6
lower leg skin
6
mature neutrophil
6
nucleus accumbens
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
Organ
5
embryo
Life stage
3
embryonic
Date released
August, 2021
2
September, 2022
1
August, 2017
1
February, 2021
1
June, 2020
Software used
2
chromhmm
2
macs
1
r
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
annotation_category!
Target gene links
annotation_type!
binding sites
biosample_term_name!
memory B cell
month_released!
August, 2021
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP