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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
127
monocyte
69
heart
66
kidney
65
stomach
56
brain
51
lung
51
muscle of arm
46
CD8-positive, alpha-beta T cell
46
small intestine
45
adrenal gland
44
muscle of leg
44
placenta
large intestine
42
neural progenitor cell
41
A549
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
B cell
39
left lung
38
liver
37
endothelial cell
36
retina
34
right lung
33
hepatocyte
33
thymus
32
hematopoietic multipotent progenitor cell
32
right kidney
31
macrophage
31
renal cortex interstitium
31
renal pelvis
29
fibroblast
27
heart left ventricle
27
left kidney
25
spinal cord
24
adipocyte
24
spleen
23
CD4-positive, alpha-beta memory T cell
23
regulatory T cell
22
adipose tissue
22
tibial nerve
21
epithelial cell of proximal tubule
21
natural killer cell
21
subcutaneous adipose tissue
20
glomerular endothelial cell
20
pigmented layer of retina
20
smooth muscle cell
19
T-helper 1 cell
19
caudate nucleus
18
T cell
18
T-helper 17 cell
17
coronary artery
17
foreskin keratinocyte
17
right atrium auricular region
16
K562
16
MCF-7
16
sigmoid colon
16
substantia nigra
16
tibial artery
15
CD8-positive, alpha-beta memory T cell
15
induced pluripotent stem cell
15
omental fat pad
15
trophoblast cell
14
endothelial cell of umbilical vein
14
frontal cortex
14
heart right ventricle
14
pericyte cell
13
H1-hESC
13
T-helper 2 cell
13
cerebellum
13
embryonic stem cell
13
excitatory neuron
13
gastrocnemius medialis
13
ovary
13
putamen
13
skeletal muscle tissue
13
testis
13
thyroid gland
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
ascending aorta
12
astrocyte
12
cardiac muscle cell
12
mesenchymal stem cell
12
mononuclear cell
12
psoas muscle
12
retinal pigment epithelial cell
12
temporal lobe
12
transverse colon
11
HepG2
11
breast cancer cell
11
foreskin fibroblast
11
keratinocyte
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
osteoblast
11
skeletal muscle myoblast
11
skeletal muscle satellite cell
11
upper lobe of left lung
10
Ammon's horn
10
chorionic villus
10
fibroblast of cardiac tissue
10
glomerular visceral epithelial cell
10
layer of hippocampus
10
left cardiac atrium
10
lymphoblastoid cell line
10
muscle of trunk
10
prostate gland
9
Peyer's patch
9
cardiomyocytes
9
endothelial cell of hepatic sinusoid
9
esophagus muscularis mucosa
9
left renal cortex interstitium
9
left renal pelvis
9
mammary gland epithelial cell
9
neuronal stem cell
9
neurosphere
9
progenitor cell of endocrine pancreas
8
H9
8
HeLa-S3
8
Rhabdomyosarcoma
8
SK-N-DZ
8
aorta
8
bronchial epithelial cell
8
endothelial cell of lymphatic vessel
8
esophagus squamous epithelium
8
fibroblast of lung
8
gastric cancer cell
8
hepatic stellate cell
8
kidney tubule cell
8
mast cell
8
right renal pelvis
8
skeletal muscle fiber
7
22Rv1
7
amygdala
7
breast epithelium
7
colonic mucosa
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mammary epithelial cell
7
neuroblastoma cell
7
right lobe of liver
7
right renal cortex interstitium
7
thoracic aorta
7
tongue
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
GM12878
6
HEK293
6
angular gyrus
6
anterior cingulate cortex
6
choroid plexus epithelial cell
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
diffuse intrinsic pontine glioma
6
duodenal mucosa
6
erythroblast
6
esophagus
6
fibroblast of dermis
6
globus pallidus
6
hypothalamus
6
lower leg skin
6
mature neutrophil
6
nucleus accumbens
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
Software used
2
macs
1
chromhmm
1
encode-ccres
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_category!
Target gene links
annotation_type!
binding sites
biosample_term_name!
large intestine
organ_slims!
pancreas
Showing 5 of 5 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP