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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
1
accessible chromatin
1
chromatin state
Annotation Category
2
cis-regulatory elements
Target gene links
Annotation type Category
1
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
128
monocyte
38
CD8-positive, alpha-beta T cell
32
endothelial cell
29
hepatocyte
25
fibroblast
25
macrophage
20
epithelial cell of proximal tubule
19
regulatory T cell
18
glomerular endothelial cell
16
B cell
16
endothelial cell of hepatic sinusoid
16
pancreatic ductal cell
15
pancreatic beta cell
14
T cell
14
T-helper 1 cell
14
pancreatic alpha cell
14
smooth muscle cell
13
T-helper 17 cell
13
common myeloid progenitor, CD34-positive
13
osteoblast
13
pancreatic acinar cell
12
excitatory neuron
12
pancreatic delta cell
11
astrocyte
11
pericyte cell
10
endothelial cell of umbilical vein
10
natural killer cell
10
skeletal muscle myoblast
9
CD4-positive, alpha-beta memory T cell
9
T-helper 2 cell
9
erythroblast
9
keratinocyte
9
mammary epithelial cell
9
mature neutrophil
9
skeletal muscle fiber
9
skeletal muscle satellite cell
8
foreskin fibroblast
8
glomerular visceral epithelial cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
neutrophil
7
CD8-positive, alpha-beta memory T cell
7
hepatic stellate cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesangial cell
7
mononuclear cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pancreatic stellate cell
7
retinal pigment epithelial cell
6
bronchial epithelial cell
6
enterocyte
6
fibroblast of lung
6
gamma-delta T cell
6
glutamatergic neuron
6
mammary gland epithelial cell
6
mesenchymal stem cell
6
trophoblast cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of cardiac tissue
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
kidney tubule cell
5
mast cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
plasma cell
5
renal cortical epithelial cell
5
tracheal epithelial cell
5
type II pneumocyte
4
CD14-positive monocyte
4
CD1c-positive myeloid dendritic cell
4
CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
basal cell
4
cardiac muscle cell
4
choroid plexus epithelial cell
4
cortical cell of adrenal gland
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of dermis
4
foreskin keratinocyte
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
pulmonary artery endothelial cell
4
renal epithelial cell
4
skin fibroblast
4
vascular associated smooth muscle cell
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
adult endothelial progenitor cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
blood cell
3
bone marrow cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
epithelial cell of esophagus
3
erythroid cell
3
gabaergic neuron
3
glial cell
3
goblet cell
3
kidney capillary endothelial cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
Organ
2
epithelium
2
eye
Life stage
1
unknown
Date released
1
June, 2020
1
September, 2022
Software used
1
chromhmm
1
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_category!
Target gene links
annotation_type!
candidate regulatory elements
biosample_type!
cell line
Showing 2 of 2 results
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Download
FileSet
DSR302XLF
released
Annotation file set
: Chromatin states for BSS00743 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR950BXJ
released
Annotation file set
: Accessible chromatin annotation for Others HIPEpiC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP