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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
histone modifications
Annotation Category
5
cis-regulatory elements
Target gene links
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
69
heart
65
kidney
64
stomach
54
brain
51
lung
51
muscle of arm
46
small intestine
45
adrenal gland
44
muscle of leg
43
islet of Langerhans
43
placenta
42
A549
42
monocyte
41
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
37
liver
36
retina
34
right lung
33
endothelial cell
33
thymus
32
B cell
32
hematopoietic multipotent progenitor cell
32
right kidney
31
renal cortex interstitium
31
renal pelvis
30
neural progenitor cell
29
hepatocyte
27
left kidney
27
macrophage
26
heart left ventricle
26
spinal cord
25
fibroblast
25
spleen
23
CD4-positive, alpha-beta memory T cell
23
adipose tissue
23
regulatory T cell
22
epithelial cell of proximal tubule
22
tibial nerve
21
EndoC_BH1
21
subcutaneous adipose tissue
20
glomerular endothelial cell
20
pancreatic ductal cell
20
pigmented layer of retina
19
T-helper 1 cell
19
adipocyte
19
body of pancreas
18
T-helper 17 cell
17
K562
17
MCF-7
17
T cell
17
caudate nucleus
17
coronary artery
17
foreskin keratinocyte
17
right atrium auricular region
17
smooth muscle cell
16
CD8-positive, alpha-beta T cell
16
endothelial cell of hepatic sinusoid
16
sigmoid colon
16
tibial artery
15
CD8-positive, alpha-beta memory T cell
15
embryonic stem cell
15
endothelial cell of umbilical vein
15
induced pluripotent stem cell
15
omental fat pad
15
pancreas
15
pancreatic beta cell
14
H1-hESC
14
frontal cortex
14
heart right ventricle
14
natural killer cell
14
retinal pigment epithelial cell
14
substantia nigra
14
trophoblast cell
13
T-helper 2 cell
13
cardiac muscle cell
13
excitatory neuron
13
gastrocnemius medialis
13
mesenchymal stem cell
13
mononuclear cell
13
ovary
13
pancreatic alpha cell
13
skeletal muscle myoblast
13
testis
13
thyroid gland
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
ascending aorta
12
foreskin fibroblast
12
keratinocyte
12
layer of hippocampus
12
pancreatic acinar cell
12
pericyte cell
12
psoas muscle
12
putamen
12
skeletal muscle tissue
12
transverse colon
12
upper lobe of left lung
11
astrocyte
11
cerebellum
11
fibroblast of lung
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
skeletal muscle satellite cell
11
temporal lobe
10
Ammon's horn
10
chorionic villus
10
glomerular visceral epithelial cell
10
left cardiac atrium
10
mammary gland epithelial cell
10
muscle of trunk
10
osteoblast
10
pancreatic delta cell
9
Peyer's patch
9
cardiomyocytes
9
endocrine pancreas
9
esophagus muscularis mucosa
9
fibroblast of cardiac tissue
9
left renal cortex interstitium
9
left renal pelvis
9
neurosphere
9
progenitor cell of endocrine pancreas
9
prostate gland
8
H9
8
HeLa-S3
8
HepG2
8
aorta
8
breast cancer cell
8
bronchial epithelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
kidney tubule cell
8
lymphoblastoid cell line
8
pancreatic stellate cell
8
right renal pelvis
8
skeletal muscle fiber
7
22Rv1
7
GM12878
7
HEK293
7
breast epithelium
7
choroid plexus epithelial cell
7
colonic mucosa
7
erythroblast
7
extended pluripotent stem (EPS) cells
7
hepatic stellate cell
7
mammary epithelial cell
7
right lobe of liver
7
right renal cortex interstitium
7
thoracic aorta
7
tongue
6
GM06990
6
GM12864
6
GM12865
6
HL-60
6
IMR-90
6
SK-N-DZ
6
angular gyrus
6
anterior cingulate cortex
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
epithelial cell of prostate
6
esophagus
6
fibroblast cell line
6
lower leg skin
6
neuronal stem cell
6
skin fibroblast
6
trophoblast
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
Life stage
2
embryonic
Date released
2
September, 2022
1
February, 2021
1
June, 2020
1
October, 2022
Software used
2
chromhmm
2
macs
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_category!
Target gene links
annotation_type!
histone modifications
month_released!
November, 2020
Showing 5 of 5 results
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Download
FileSet
DSR840PQH
released
Annotation file set
: Binding sites annotation for AG04449 cell (AG04449) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR324ELY
released
Annotation file set
: Candidate regulatory elements for BSS00061 AG04449 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR798XKA
released
Annotation file set
: Chromatin states for BSS00061 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR551DCG
released
Annotation file set
: Binding sites annotation for Epidermis AG04449 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR234YON
released
Annotation file set
: Accessible chromatin annotation for Epidermis AG04449 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP