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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
Target gene links
6
cis-regulatory elements
Annotation type Category
RNA-seq
5
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
cell line
1
stem cell
Biosample term
108
monocyte
47
heart
44
CD8-positive, alpha-beta T cell
44
stomach
43
kidney
36
brain
35
muscle of arm
35
neural progenitor cell
33
endothelial cell
33
lung
32
retina
30
placenta
30
small intestine
29
adrenal gland
29
muscle of leg
28
fibroblast
28
large intestine
27
B cell
27
common myeloid progenitor, CD34-positive
27
muscle of back
26
left lung
25
A549
25
liver
24
macrophage
23
right lung
22
hematopoietic multipotent progenitor cell
22
hepatocyte
22
pancreatic ductal cell
22
renal cortex interstitium
22
renal pelvis
22
right kidney
22
thymus
20
adipocyte
20
breast cancer cell
20
epithelial cell of proximal tubule
20
pigmented layer of retina
19
spinal cord
18
glomerular endothelial cell
18
left kidney
17
heart left ventricle
17
spleen
16
natural killer cell
16
smooth muscle cell
15
pancreatic beta cell
14
CD4-positive, alpha-beta memory T cell
14
MCF-7
14
cardiac muscle cell
14
foreskin fibroblast
14
foreskin keratinocyte
14
keratinocyte
14
pancreas
14
pancreatic acinar cell
14
retinal pigment epithelial cell
13
T cell
13
islet of Langerhans
13
pericyte cell
12
CD4-positive, alpha-beta T cell
12
HepG2
12
K562
12
adipose tissue
12
excitatory neuron
12
neuroblastoma cell
12
pancreatic alpha cell
11
EndoC_BH1
11
embryonic stem cell
11
endothelial cell of hepatic sinusoid
11
endothelial cell of umbilical vein
11
mammary epithelial cell
11
mesenchymal stem cell
11
neuronal stem cell
10
Rhabdomyosarcoma
10
gastric cancer cell
10
osteoblast
10
pancreatic delta cell
10
progenitor cell of endocrine pancreas
10
regulatory T cell
10
sigmoid colon
10
skeletal muscle myoblast
10
trophoblast cell
10
upper lobe of left lung
9
astrocyte
9
caudate nucleus
9
coronary artery
9
diffuse intrinsic pontine glioma
9
fibroblast of cardiac tissue
9
liposarcoma
9
tibial nerve
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
T-helper 1 cell
8
body of pancreas
8
bronchial epithelial cell
8
hepatic stellate cell
8
left cardiac atrium
8
mast cell
8
ovary
8
pancreatic stellate cell
8
psoas muscle
8
skeletal muscle fiber
8
skeletal muscle satellite cell
8
thyroid gland
8
transverse colon
7
B-lymphoblastoid cell line
7
GM12878
7
HEK293
7
T-helper 17 cell
7
chorionic villus
7
choroid plexus epithelial cell
7
erythroblast
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
fibroblast of lung
7
gastrocnemius medialis
7
glomerular visceral epithelial cell
7
heart right ventricle
7
mammary gland epithelial cell
7
mature neutrophil
7
mononuclear cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
prostate gland
7
right renal pelvis
7
testis
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
H9
6
HeLa-S3
6
IMR-90
6
Peyer's patch
6
chondrocyte
6
hESC cell
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
neuroblastoma cell line
6
neurosphere
6
neutrophil
6
skeletal muscle tissue
6
substantia nigra
6
temporal lobe
6
tibial artery
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM12875
5
GM19240
5
GM23248
5
Glomerular Capillary Endothelial Cell
5
H1-hESC
5
HAP-1
5
HL-60
5
HT-29
5
Jurkat
5
Non-Classical Monocyte
5
SGBS preadipocytes
5
SW480
5
T-helper 2 cell
5
WERI-Rb-1
Organ
6
embryo
Life stage
2
embryonic
Date released
2
February, 2021
1
August, 2017
1
June, 2020
1
October, 2022
1
September, 2022
Software used
3
macs
2
chromhmm
1
r
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
annotation_category!
Target gene links
annotation_type_category!
RNA-seq
files.file_type!
bed bed9
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP