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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
Annotation Category
5
cis-regulatory elements
Target gene links
Annotation type Category
12
ChIP-seq
5
ATAC-seq
5
DNase-seq
5
RNA-seq
4
snATAC-seq
1
snRNA-seq
Available data
5
bed bed3+
3
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
21
retina
20
pigmented layer of retina
15
monocyte
10
neural progenitor cell
9
EndoC_BH1
7
kidney
6
embryonic stem cell
6
islet of Langerhans
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
5
hepatocyte
4
coronary artery
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
4
liver
3
CD4-positive helper T cell
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
adipocyte
3
adipose tissue
3
subcutaneous adipose tissue
2
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
heart left ventricle
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
osteoblast
2
pancreatic beta cell
2
regulatory T cell
2
right atrium auricular region
2
thoracic aorta
2
tibial artery
2
tibial nerve
1
Adipose SGBS cell line (adipocyte)
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
astrocyte
1
cardiac muscle cell
1
cardiac precursors
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell
1
excitatory neuron
1
gabaergic neuron
1
glomerular visceral epithelial cell
1
heart
1
hippocampal neuron
1
immature natural killer cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lower motor neuron
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
natural killer cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-neuronal cell
1
oligodendrocyte
1
omental fat pad
1
pancreas
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic ductal cell
1
plasma cell
1
plasmacytoid dendritic cell
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
renal intercalated cell
1
renal principal cell
1
smooth muscle cell of the coronary artery
1
spleen
Organ
3
connective tissue
Date released
2
May, 2020
1
February, 2024
1
November, 2022
1
October, 2019
Software used
3
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_category!
Target gene links
biosample_term_name!
pituitary stalk
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR576LBA
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal naive thymus-derived CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR901XNB
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated naive thymus-derived CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP