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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
Target gene links
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
128
monocyte
45
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
32
endothelial cell
30
B cell
30
hepatocyte
25
fibroblast
25
macrophage
24
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
20
T-helper 1 cell
20
glomerular endothelial cell
18
T cell
18
T-helper 17 cell
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
natural killer cell
16
pancreatic ductal cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
15
osteoblast
15
pancreatic beta cell
14
T-helper 2 cell
14
foreskin fibroblast
14
mononuclear cell
14
pancreatic alpha cell
14
skeletal muscle myoblast
14
smooth muscle cell
13
astrocyte
13
pancreatic acinar cell
13
trophoblast cell
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
fibroblast of lung
12
keratinocyte
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neutrophil
12
pancreatic delta cell
12
pericyte cell
11
skeletal muscle satellite cell
10
bronchial epithelial cell
10
glomerular visceral epithelial cell
10
neurosphere
9
erythroblast
9
mammary gland epithelial cell
9
mature neutrophil
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
dermis blood vessel endothelial cell
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
hepatic stellate cell
8
kidney tubule cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pancreatic stellate cell
7
renal cortical epithelial cell
6
CD1c-positive myeloid dendritic cell
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
enterocyte
6
epithelial cell of prostate
6
fibroblast of breast
6
gamma-delta T cell
6
glutamatergic neuron
6
kidney epithelial cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
skin fibroblast
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mast cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
plasma cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
5
type II pneumocyte
4
T-cell
4
acute myeloid leukemia cell
4
adipocyte
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
basal cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
cortical cell of adrenal gland
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
inflammatory macrophage
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
lung microvascular endothelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
vascular associated smooth muscle cell
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
Organ
1
epithelium
1
intestine
1
small intestine
Date released
1
November, 2021
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
annotation_category!
Target gene links
biosample_term_name!
lung microvascular endothelial cell
organ_slims!
pericardium
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR273VIV
released
Annotation file set
: Accessible chromatin annotation of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE